Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq1 87.8 1e-12 >seq3 Length=64984695 Score = 114 bits (126), Expect = 1e-20 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || |||||||| || || | | |||||||| || || || | || Sbjct 32924560 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 32924619 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | |||||||| | |||| | || || ||||||||| ||||||||||| || || Sbjct 32924620 TTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCAC 32924679 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || ||||| ||| |||| | ||| || | ||| ||||||||||| || || || Sbjct 32924680 ACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCAC 32924739 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | || ||||||||||||||| ||||| || | || || Sbjct 32924740 ATAGAACTGCGCAAACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 32924796 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 27429 |||||| || | | ||||| |||| || || || |||||| Sbjct 32924797 GTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTGTTC 32924839 >seq1 Length=43764888 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | || | || || || ||||| |||||||||||| ||||| || || Sbjct 2359068 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCAAG 2359009 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||| || |||||||||| |||||||| Sbjct 2359008 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 2358949 Query 27336 CTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAA-GTCTTTGGGGTTCCAGG 27394 |||| | |||||| |||||||| ||||| | | || ||| || ||||| | Sbjct 2358948 CTGAGCAAACATGTGGCATGGAGGAAGTGCCAT-CGCCTTAAGGTCAGAAGGATTCCAAG 2358890 Query 27395 CGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 | ||| || || |||| || || || |||||| |||| Sbjct 2358889 CCGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 2358850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369359102207066