Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq7 100 4e-16 >seq2 Length=52886895 Score = 104 bits (114), Expect = 3e-17 Identities = 379/583 (65%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| |||| || | ||||| || || |||||| Sbjct 45186975 CACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTGAGC 45187034 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || |||||||| |||||||| || || | || ||| | || || ||||| Sbjct 45187035 CCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAA 45187093 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| || ||||| || || | ||||| || || ||| ||| | Sbjct 45187094 GATCCCTTCGACGCAAGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CGTCG 45187151 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | ||||| ||| || ||||| || || || || || Sbjct 45187152 ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGG 45187211 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | || | | || || | || ||||||| || ||||| ||||| Sbjct 45187212 AAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAACAAGAGACTGTACATC 45187271 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || || || || || || ||||| || ||||| || | || || | | | Sbjct 45187272 TCCGAGTGGATATTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACC 45187331 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || || | | |||||| || || || || || || Sbjct 45187332 TGCACGTC-GGACATGAACCGGGTGGCGAGATTCTCGAGAACGATCCCGTCGGAGGCGGC 45187390 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTC-AGTTTATT---CC 47101 || || || | || ||||| || || | || || || ||| || || || || Sbjct 45187391 GAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTCGAGATTGTTCTCCC 45187449 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 |||| | |||| || | || |||||||| || |||||||| || || || |||| Sbjct 45187450 AGTCGCGTGTGTCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGCTT 45187509 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | || ||||| | ||| || | | || ||||| || || || Sbjct 45187510 TCTTGTACATCTCCCAGATCTGCGGGTAGTGGATTGGGAACAT 45187552 >seq7 Length=48366697 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| | ||||| | || ||||||||||||||||||||| | ||| | || || Sbjct 27689544 AGTTCCAGAGTTAAAGAGGGTGGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 27689485 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| || | | | ||| || |||||| || |||||| || |||| || | ||| | Sbjct 27689484 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACTCTCATGAG 27689425 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| || || || | ||| || | ||||||| |||| | Sbjct 27689424 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTTAAAAGGTATGATCTTTCAAG 27689365 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || ||||| || |||| ||| || || | |||||||| || Sbjct 27689364 AGTCTTGAAACCGAAGTAGTCATATTCGAAATCGCGGTCGTAAATGAT 27689317 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 |||||||||||||||||| || || || || |||||||||||||| ||||| | | | || Sbjct 27691120 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCATGTT 27691061 Query 76144 GGAAATTTCAGCT-TCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| ||| ||| | |||| || | ||| | ||| || || ||||||||||| Sbjct 27691060 TGAAGTTTTAGCCGTCTCCA-TAGGATAGTGATTCACATCAATTATCTTATTGAGATT 27691004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712641330491520