Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3 491 6e-134 seq5 320 2e-82 seq6538 109 7e-19 seq9 96.9 4e-15 seq24928 95.1 2e-14 >seq3 Length=64984695 Score = 491 bits (544), Expect = 6e-134 Identities = 713/1004 (71%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 33666003 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 33665944 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 33665943 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33665884 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || ||| |||||| || | ||||| Sbjct 33665883 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACG 33665824 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || || |||||| | ||| ||| | | Sbjct 33665823 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 33665764 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| || Sbjct 33665763 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 33665705 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 33665704 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33665645 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 33665644 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33665585 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||| | | || || ||||||| |||| Sbjct 33665584 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 33665525 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 33665524 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33665465 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| |||||||| || ||| | || |||||||| ||||| Sbjct 33665464 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33665405 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG 186749 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 33665404 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 33665345 Query 186750 GGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGAC 186809 ||| | |||| | | |||| | | ||||| ||| | ||||| ||||| |||||| Sbjct 33665344 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 33665285 Query 186810 TTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAG 186869 || || ||||| | | ||||| || ||||| || || ||||| |||||||| || Sbjct 33665284 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33665225 Query 186870 AATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAA 186929 ||||| || || || |||||| | || || |||||||| | ||||| || |||||| Sbjct 33665224 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33665165 Query 186930 AACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||| || |||| ||||| || || | ||| | || |||||||| Sbjct 33665164 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33665121 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || || || || || | ||||| ||||||||||||||| |||| ||| || || || Sbjct 16639401 GACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTTGC 16639460 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | |||||||| ||||| |||||||| || || || |||| || || || || || Sbjct 16639461 AGAGCTGGTGCGTGTTCCACCTGTGCCGGTAAGATCGAGAAAGGCCAAGTAGACCAGTCT 16639520 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTT 171150 ||| || || ||||| |||||||| || || ||||| Sbjct 16639521 GATGGTTCCTTTCTTGAGGATGATCACATGGACAAAGGTT 16639560 >seq5 Length=46902585 Score = 320 bits (354), Expect = 2e-82 Identities = 405/557 (73%), Gaps = 0/557 (0%) Strand=Plus/Plus Query 186417 TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAA 186476 |||||||| || || ||||| || || || || ||| ||||| | | || ||||| Sbjct 22000812 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAA 22000871 Query 186477 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGT 186536 || || || || ||||| ||||| ||||| || |||||||| || || ||| | || || Sbjct 22000872 GGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGC 22000931 Query 186537 GGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGC 186596 | |||||| | | || || ||||||| |||||||||||||||| | | ||||||||| Sbjct 22000932 GCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGT 22000991 Query 186597 GAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATG 186656 || ||||| |||||| || || | | || |||| |||||||| ||||| ||| Sbjct 22000992 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATG 22001051 Query 186657 GTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGG 186716 ||||| || ||| | || |||||||| ||||| || |||| ||| |||||| |||||| Sbjct 22001052 GTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGG 22001111 Query 186717 CTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATT 186776 | |||||||| ||| | ||||| || || | ||| | |||| | | |||| | Sbjct 22001112 TTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTA 22001171 Query 186777 ATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCA 186836 | ||||| ||| | ||||| ||||| |||||||| || ||||| | | ||||| Sbjct 22001172 GTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCG 22001231 Query 186837 GAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGT 186896 || ||||| || || ||||| |||||||| || ||||| || || || |||||| | || Sbjct 22001232 GAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGC 22001291 Query 186897 GCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTG 186956 || |||||||| | ||||| || ||||||||| || |||| ||||| || || | Sbjct 22001292 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 22001351 Query 186957 CCAAGAGGCAACGCTCT 186973 ||| | || |||||||| Sbjct 22001352 CCACGTGGAAACGCTCT 22001368 >seq6538 Length=695 Score = 109 bits (120), Expect = 7e-19 Identities = 203/298 (68%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| || || | || || ||| | || || ||||| ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 518 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 577 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||| | | | |||| ||||||||||| | | Sbjct 578 TTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCAC 637 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 186268 |||| || ||| || |||| ||| | || || || ||| |||||| || || || Sbjct 638 AAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 >seq9 Length=54679868 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 171006 CTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGT 171065 || || ||||| || |||||||| | || ||| || || || ||||| ||| |||| Sbjct 13977646 CTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 13977587 Query 171066 TCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTT 171125 |||| |||||| || ||| ||| | |||||||||||| || || || || |||||| Sbjct 13977586 TCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTCTGTTGACCAGTCTGACCAGAGTTTCCTC 13977527 Query 171126 GATGATGATCAGATTG 171141 |||||||| ||||||| Sbjct 13977526 GATGATGACCAGATTG 13977511 >seq24928 Length=265 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19649 GGGGAATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGT 19708 ||||| |||||| |||||||||||| ||||||||||| ||||| ||||||||||||| | Sbjct 28 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 87 Query 19709 CTCCTATTCTCC 19720 |||||| ||||| Sbjct 88 CTCCTAGTCTCC 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621814682410320