Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3 558 4e-154 seq5 329 4e-85 seq6538 150 2e-31 seq24928 93.3 5e-14 seq8 87.8 2e-12 >seq3 Length=64984695 Score = 558 bits (618), Expect = 4e-154 Identities = 720/991 (73%), Gaps = 2/991 (0%) Strand=Plus/Minus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 33666106 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTC 33666047 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 33666046 GCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 33665987 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || |||||||||||||| || | Sbjct 33665986 GCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAT 33665927 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||||| | || | || ||||||||||| | ||||| || || | || Sbjct 33665926 AGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGT 33665867 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||| ||| | || || || ||| ||||||| || | |||||| || || ||| | ||| Sbjct 33665866 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACGGTGCTTTCGCATTAATA 33665807 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGC 165538 ||||| ||| | || || |||||||| || ||| || || | | || ||||| ||||| Sbjct 33665806 GGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGC 33665748 Query 165539 TATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGG 165598 || || ||||||||||| |||||||| || ||| ||| ||||| || ||||| || || Sbjct 33665747 AATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTTCTAATTTATCCACTAGG 33665688 Query 165599 ACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCT 165658 ||||| |||||||| || || || || || || || || || |||||| | || Sbjct 33665687 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCT 33665628 Query 165659 CTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGG 165718 ||| |||||||||| ||||| ||||| |||| || ||||| |||||||| || || || Sbjct 33665627 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGG 33665568 Query 165719 TATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTA 165778 | | | |||| || || | | || |||||||||| ||| ||||| |||||||| | Sbjct 33665567 TGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 33665508 Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || ||| || ||| | ||||| | || ||||| Sbjct 33665507 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 33665448 Query 165839 TTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 165898 |||||| |||||||| |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 33665447 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 33665388 Query 165899 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 165958 ||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 33665387 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGC 33665328 Query 165959 TATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| | | ||||| || | || || ||||| ||||| || || || ||||| || Sbjct 33665327 TCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 33665268 Query 166019 TAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGA 166078 | || || || ||||| || ||||| || |||||||| ||||| || || | || || Sbjct 33665267 CCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGA 33665208 Query 166079 AGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGA 166138 ||| | || || ||| |||| || ||| || |||||||| ||| || | |||||||| Sbjct 33665207 AGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 33665148 Query 166139 AGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | ||| | || ||||| |||||| Sbjct 33665147 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 33665117 >seq5 Length=46902585 Score = 329 bits (364), Expect = 4e-85 Identities = 421/580 (73%), Gaps = 0/580 (0%) Strand=Plus/Plus Query 165590 TCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCG 165649 ||| || || ||||| |||||||| || || || || || || || || || || Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 165650 ATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGG 165709 |||| | ||||| |||||||||| ||||| ||||| |||| || ||||| |||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 165710 CGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAA 165769 || || ||| | | |||| || || | | ||| |||||||||| ||| ||||| || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 165770 TACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGA 165829 |||||| | |||||||||||| ||||| || ||| || ||| | ||||| | Sbjct 22000973 TACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 22001032 Query 165830 AGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGC 165889 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| |||| Sbjct 22001033 CGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGC 22001092 Query 165890 TTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTG 165949 ||| |||||| |||||| | || ||||||||| | ||||| || || | || | || Sbjct 22001093 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATG 22001152 Query 165950 GACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTC 166009 || ||| || |||| | | ||||| || | || || ||||| ||||| || || || Sbjct 22001153 GATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTC 22001212 Query 166010 TCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCT 166069 ||||| || | || || || ||||| || ||||| || |||||||| ||||| || || Sbjct 22001213 CCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCT 22001272 Query 166070 CCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGT 166129 | || ||||| | || || ||| |||| || ||| || |||||||| ||| || | Sbjct 22001273 TTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTAT 22001332 Query 166130 GTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 |||||||| || || | ||| | || ||||| |||||| Sbjct 22001333 ATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 22001372 >seq6538 Length=695 Score = 150 bits (166), Expect = 2e-31 Identities = 202/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| || Sbjct 415 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCAATTCC 474 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| | ||||||||| | || || || || || || || ||||||||||| ||| | Sbjct 475 GCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTG 534 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || ||||||||| | || ||| || ||| | || || |||||||||||||| || | Sbjct 535 GCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAAA 594 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | | | |||| | | || | || ||||||||||| | ||||||||||||| || Sbjct 595 AGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGGGACTTCACTCGT 654 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCA 165460 ||||| ||| | || || || ||| ||||||| || || || Sbjct 655 TGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 >seq24928 Length=265 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 18250 GGGGA-TTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGT 18308 ||||| |||||| |||||||||||| ||||||||||| ||||| ||||||||||||| | Sbjct 28 GGGGACTTAGCTTAGTTGGTAGAGCGCCTGCTTTGCACGCAGGAGGTCAGGAGTTCGACT 87 Query 18309 CTCCTATTCTCCA 18321 |||||| |||||| Sbjct 88 CTCCTAGTCTCCA 100 >seq8 Length=41758685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||| || ||| | || ||||| || |||||||| ||| | || | || Sbjct 19692372 GTGCGAAGATGATGTCTACGTCCTCGACGCGGCGGAGGAAGCAGGTATCGATTTGCCTTA 19692431 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || ||||| || ||| ||||||||||| |||| || Sbjct 19692432 CTCATGCCGTGCGGGATCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTCCGTTGA 19692491 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694 ||| | |||||| |||| | ||||||||||| || Sbjct 19692492 CCAGACGGACCAGAGCTTCTTAGACGATGACCAGAT 19692527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557425162217520