Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20oleracea_20var._20oleracea_20[refseq_20GCF_5F000695525.1_ 202014-05-27] 32,886 sequences; 488,954,160 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3 515 5e-141 seq5 363 2e-95 seq6538 87.8 2e-12 >seq3 Length=64984695 Score = 515 bits (570), Expect = 5e-141 Identities = 721/1009 (71%), Gaps = 2/1009 (0%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 33666123 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 33666064 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| | || | || || ||| | || || || || ||||| || | Sbjct 33666063 TTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 33666004 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| || || ||| | || ||||| || | |||||| ||||| | || || || | Sbjct 33666003 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 33665944 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 33665943 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 33665884 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || ||||| || |||| ||| | || || || ||| |||||| || | ||||| Sbjct 33665883 AAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCACCACG 33665824 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || || || | |||||||| ||| | || || |||||| | ||| ||| || Sbjct 33665823 GTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAA 33665765 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | |||| || ||||||||||| ||||||||||| || ||||| ||||| || || Sbjct 33665764 TTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTT 33665705 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || || || |||||||||| || ||| ||||| || || || Sbjct 33665704 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 33665645 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | ||||| | ||||| || || || |||||| |||| ||||||||| Sbjct 33665644 ATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 33665585 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| || || ||| | || |||| || || | | || |||||||||| ||| Sbjct 33665584 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCATGGTGCTACT 33665525 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 ||||| |||||||| | ||||||||||||| ||||| || || || ||| || | Sbjct 33665524 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 33665465 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 ||||| | ||||| || ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 33665464 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTT 33665405 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | Sbjct 33665404 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACT 33665345 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| | ||| | ||| ||| || | | ||||| ||| | || || | || ||||| Sbjct 33665344 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGAC 33665285 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| ||||| || | ||||| |||||||| || || ||||| |||||||| || Sbjct 33665284 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAA 33665225 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || || || |||||| |||| || |||||||| | ||| || || |||||| Sbjct 33665224 AATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 33665165 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 33665164 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 33665116 >seq5 Length=46902585 Score = 363 bits (402), Expect = 2e-95 Identities = 429/581 (74%), Gaps = 0/581 (0%) Strand=Plus/Plus Query 171032 TCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCG 171091 ||| || || || || |||||||||| || ||| ||||| || || || || || || Sbjct 22000793 TCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCG 22000852 Query 171092 CTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGG 171151 ||| | ||||| | ||||| || || || |||||| |||| ||||||||||||||||| Sbjct 22000853 ATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGG 22000912 Query 171152 TGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAA 171211 || || ||| | || |||| || || | | ||| |||||||||| ||| ||||| || Sbjct 22000913 AGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGTGCTATTCATGGTGCTACTGTAGAAAA 22000972 Query 171212 TACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGA 171271 |||||| | ||||||||||||| ||||| || || || ||| || | ||||| | Sbjct 22000973 TACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 22001032 Query 171272 GGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGC 171331 ||||| || ||||| |||||||| ||||| || || ||||| || || ||||| | || Sbjct 22001033 CGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGC 22001092 Query 171332 GTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTG 171391 || |||||| |||||||| |||||||||||| | ||||| || || | ||| | || Sbjct 22001093 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATG 22001152 Query 171392 GGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAG 171451 | | ||| ||| || | | ||||| ||| | || || | || ||||| ||||| Sbjct 22001153 GATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTC 22001212 Query 171452 TCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCT 171511 ||||| || | ||||| |||||||| || || ||||| |||||||| || || || || Sbjct 22001213 CCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCT 22001272 Query 171512 ATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGT 171571 || || |||||| |||| || |||||||| | ||| || || ||||||||| || | Sbjct 22001273 TTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTAT 22001332 Query 171572 GTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| ||||| |||||||| ||||| || || |||| || Sbjct 22001333 ATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 22001373 >seq6538 Length=695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 198/298 (66%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 398 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 457 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| || || | || || ||| | || || || || ||||| || | Sbjct 458 TTCCTTGTGCCAATTCCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 517 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| || || ||| | || ||||| || | |||||| ||||| | || || || | Sbjct 518 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 577 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| | | | | |||| | | | |||| ||||||||||| | | Sbjct 578 TTTCTACTCCTGCTAAAAGTTTAGCGCATTTTTTGTTGTTACTGTGGGGTCCTGAAGCAC 637 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCA 170902 | ||||| ||| || |||| ||| | || || || ||| |||||| || || || Sbjct 638 AAGGGGACTTCACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTTCA 695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591954962042720