Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq1 89.7 4e-13 >seq3 Length=31725688 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| |||||||||||||||||||| || | || Sbjct 29591472 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCG 29591413 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 29591412 TGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 29591353 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||||| | ||| |||| ||||| Sbjct 29591352 TACTCACTTCTTACATGCATCCTAGCTCATGT 29591321 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| |||| ||| |||||||||||||||||| || || | || Sbjct 1752225 ATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTCA 1752284 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| || || |||||||| ||||| || Sbjct 1752285 TGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTGGGTGTACCGTTTAACATCGCCTCG 1752344 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || | |||||||| | || | || ||||| Sbjct 1752345 TACTCCCTTCTTACATGTATCCTCGCTCATGT 1752376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399308029430205