Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 105 5e-18 seq1 82.4 6e-11 >seq3 Length=31725688 Score = 105 bits (116), Expect = 5e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||| ||| || ||||| || |||| | |||||||| | | Sbjct 20592705 TGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGC 20592764 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| || | | |||||| ||| Sbjct 20592765 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCT 20592824 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| || || || |||| Sbjct 20592825 GAACGCTGATACATCTGGCATGAGAGCT 20592852 >seq1 Length=28635137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | || || || | ||| || || || |||||||| || || || | Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| ||||||| ||||| || ||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || | || || || || | |||| || ||| ||| ||||||||| Sbjct 1752257 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 1752198 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 |||||| |||| | ||| || || ||||| || Sbjct 1752197 CGACATTATAATCCGGCGATC-GTCAGGATTGTTCTT 1752162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361073993755499