Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq8 113 5e-20 >seq6 Length=26286742 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 |||||| | ||||| | ||| ||||| || || || |||||| | ||| | || || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| |||| || |||||| || |||||| || |||||| || || | || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | || | | ||||| | ||| ||| | || | Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| || || ||||| |||| ||| |||||| || |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 >seq8 Length=21613650 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 16023299 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 16023358 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 16023359 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 16023418 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || ||||| || |||| || | ||| || ||| ||||||||||| || Sbjct 16023419 AACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATAT 16023478 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||||| || ||||||||| ||||| Sbjct 16023479 TCCCTCGATGCTATCATCCTTCATG 16023503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593422891241520