Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 4e-14 seq1 91.5 1e-13 seq26880 82.4 7e-11 seq6 82.4 7e-11 >seq10 Length=17599535 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || || ||||| ||||| || || ||| ||| || | | Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | | | ||| || ||| || || ||||| | || || || Sbjct 17168652 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 17168711 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| | ||| |||| |||||||| Sbjct 17168712 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 17168771 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || ||||||||| | ||||| || Sbjct 17168772 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 17168807 >seq1 Length=28635137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || |||||||| || || || ||| |||||||| || || |||| ||| Sbjct 22221532 GACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAAGATGGCAGGACCTTGGCTGAT 22221473 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| ||||| |||||| |||| || || |||| ||||| Sbjct 22221472 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 22221420 >seq26880 Length=258 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || |||||||| || || || ||| |||||||| || || |||| ||| Sbjct 48 GACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAAGATGGCAGGACCTTGGCTGAT 107 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| ||||| |||||| |||| Sbjct 108 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 142 >seq6 Length=26286742 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || || ||||| || || || || ||||||| || || |||| ||| Sbjct 15796386 GATCAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGAT 15796445 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||| ||||| |||||| |||| || || |||| ||||| Sbjct 15796446 TACAATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGG 15796498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428125886334095