Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 >seq3 Length=31725688 Score = 105 bits (116), Expect = 8e-18 Identities = 180/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || || || || ||||| | ||| |||| || || || Sbjct 20592678 AGAGGCCTCACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCA 20592737 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | || || | |||| | || || || |||||| || ||||| Sbjct 20592738 GGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTA 20592797 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || | ||| ||| | || ||||| |||| |||||| ||||||||||| Sbjct 20592798 AACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCT 20592857 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT-GGCGGGCAGGT 145921 ||||||| |||||||| ||| | | |||||| || ||||| ||||| || | |||| Sbjct 20592858 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGCAGCGCCATCAGCTTG-AGGT 20592915 Query 145922 CCGCCGGGTTCCAGGC 145937 | | |||||||| || Sbjct 20592916 CAGAAGGGTTCCAAGC 20592931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589779924985960