Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq10 84.2 2e-11 seq26880 82.4 6e-11 seq6 82.4 6e-11 >seq1 Length=28635137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || |||||||| || || || |||||||||||| || || |||| ||| Sbjct 22221532 GACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAAGATGGCAGGACCTTGGCTGAT 22221473 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| ||||| ||||| |||||| |||| || || |||| ||||| Sbjct 22221472 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGTCTTGCGTCTACGTGGAGG 22221420 >seq10 Length=17599535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | || || ||||| ||||| || || ||| ||| || | | Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | | | ||| || ||| || || ||||| | || || || Sbjct 17168652 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 17168711 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||||| ||||| || || ||||| | || ||| | ||| |||| |||||||| Sbjct 17168712 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 17168771 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||| || ||||||||| | ||||| || Sbjct 17168772 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 17168807 >seq26880 Length=258 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || |||||||| || || || |||||||||||| || || |||| ||| Sbjct 48 GACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAAGATGGCAGGACCTTGGCTGAT 107 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||| ||||| ||||| |||||| |||| Sbjct 108 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 142 >seq6 Length=26286742 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || || || ||||| || || || || |||||||| || || |||| ||| Sbjct 15796386 GATCAGCAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGAT 15796445 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || ||||| ||||| |||||| |||| || || |||| ||||| Sbjct 15796446 TACAATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGG 15796498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410595289920086