Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 102 6e-17 >seq3 Length=31725688 Score = 102 bits (112), Expect = 6e-17 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||||||||| |||| | ||| |||| | ||| | |||||||| || | | Sbjct 20592665 AAGCTGCTCTTGAAGAGGCCTCAC-GTGAGTTCGATACACATGAGCATCCCCAATGACAT 20592723 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | | ||| || ||||| || | |||| ||||| || | ||| ||||| | ||||| | Sbjct 20592724 GGACAAAATCACCAGGGACAAGATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGT 20592783 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| || || | |||||| ||||| | ||||| | ||| | Sbjct 20592784 AGGAAGCAATGTTAAACGGCACACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGC 20592843 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACA--TGACAGGGGGGCAACGC 97268 | || |||| || || |||||| ||||| | ||| ||| || || || |||| ||| Sbjct 20592844 ATGAGAGCTCCCCTTCCGCCACATAGAACTG-CGCAA-ACATGTGGCACGGAGGCAGCGC 20592901 Query 97269 CAT 97271 ||| Sbjct 20592902 CAT 20592904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346613890418930