Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8 104 4e-17 seq9 93.3 6e-14 seq10 86.0 9e-12 seq3 86.0 9e-12 >seq8 Length=21613650 Score = 104 bits (114), Expect = 4e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || ||||| || ||||||||||||||||| ||||| || ||||| || |||||| | Sbjct 8932447 CAGGACAAAGAGGGGATACCACCTGATCAACAGAGGCTCATCTTTGCTGGGAAACAACTT 8932506 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| ||| || || || ||||| ||||| || ||| | || |||||| Sbjct 8932507 GAGGATGGTCGAACGCTAGCTGACTACAACATTCAGAAAGAGTCCACTCTTCACTTGGTT 8932566 >seq9 Length=37155481 Score = 93.3 bits (102), Expect = 6e-14 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-A 124592 |||| ||||| || || | |||||||| ||||| || || || ||| | ||| | || | Sbjct 16961160 TACAGATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGA 16961101 Query 124593 GCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCT 124652 || |||||| || || | ||| || ||||| |||||||||||||| || | Sbjct 16961100 GCTC-TGATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCAG 16961042 Query 124653 GATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGAT 124712 ||||| ||||| | || ||||| || || || | || ||| | || || | | || Sbjct 16961041 GATCAGCAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGGCGTACCCTCGCTGAC 16960982 Query 124713 TATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||||| || |||||||||||| Sbjct 16960981 TACAACATTCAAAAGGAGTCAACTTTGCAT 16960952 >seq10 Length=17599535 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || ||||| || || | ||| |||| ||| Sbjct 17168365 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTC- 17168423 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | ||| || ||||| || || ||||| || ||||| || || Sbjct 17168424 TGACACGATTGACAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCA 17168483 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || || || || ||||| | |||||| |||| || | | |||||||| Sbjct 17168484 GCAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTATAA 17168543 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || || || || | || | || || ||| | || ||||| || Sbjct 17168544 TATTCAGAAGGAGTCTACCCTTCACCTTGTGTTGCGTCTCCGTGGTGGAAT 17168594 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | ||||| | |||||||| |||||||| | || |||| ||| Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || || || | || || ||||| || || ||||| || || || || | Sbjct 17168652 A-GACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACC 17168710 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| || || || || || || ||||| | |||||| || | || || | ||||| | Sbjct 17168711 AACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACA 17168770 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | || || || || || ||| | || | || || ||| | || ||||| Sbjct 17168771 ACATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGG 17168819 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| ||||||| || || || || ||||| | || Sbjct 13311200 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 13311259 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||| || || ||||| ||||| || || || || Sbjct 13311260 GACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCAGACCAG 13311319 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || ||||| | |||||| |||| || || | || ||||| Sbjct 13311320 CAGAGGCTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTACTTTGGCTGACTATAAC 13311379 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | || |||| | | | || |||||||| Sbjct 13311380 ATCCAGAAAGAATCAACTCTTCACCTGGTGCTCAGGCTCCGTGGTGGTAT 13311429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755075920643200