Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-22 seq1 118 1e-21 seq7 116 4e-21 seq4 114 1e-20 seq6 113 5e-20 seq10 109 6e-19 seq8 107 2e-18 seq5 107 2e-18 seq3 102 9e-17 seq28121 82.4 9e-11 seq26880 82.4 9e-11 seq23325 82.4 9e-11 seq11563 82.4 9e-11 >seq9 Length=37155481 Score = 122 bits (134), Expect = 1e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||| ||||| || | || |||||| || |||||||||||||| Sbjct 16984472 CCTCCACGCAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCG 16984531 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || | |||| || |||||||||||||| || || | ||||||||||||| || Sbjct 16984532 AGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 16984591 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | |||||||| | || | || | || | ||| | | | ||||| |||| || Sbjct 16984592 ATACCCTCCTTGT-CTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTC---TC 16984647 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||| |||||| || || || || || ||||| |||||||| ||||| Sbjct 16984648 CACCTCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 16984698 Score = 113 bits (124), Expect = 5e-20 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| ||||| ||||| || || || || || | Sbjct 16984027 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACC 16984086 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 16984087 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 16984146 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| |||||| |||| | | | ||||| |||| ||||| || | || Sbjct 16984147 GTCTTGGATTTTGGCCTTGACGTTATCAATGGTGTCCGAGCTC---TCCACCTCAAGTGT 16984203 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || || ||||| |||||||| ||||| Sbjct 16984204 GATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 16984242 Score = 113 bits (124), Expect = 5e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || | ||||| || || || || || |||| || |||||||| || ||||| Sbjct 30362436 CTCCTTCTGGGTGTTGTAGTCGGCGAGCGTGCGTCCGTCTTCCAGCTGCTTCCCGGCGAA 30362377 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||||| || | || ||||||||| ||| || |||| | Sbjct 30362376 AATCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 30362317 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| ||||| ||||| ||||| || || || || Sbjct 30362316 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTTCCCGTAAGGGTTTTCAC 30362257 Query 43172 AAAGATTTGCATTTTTACGCCG 43193 |||||| ||||| ||| || || Sbjct 30362256 AAAGATCTGCATCTTTGCGGCG 30362235 Score = 109 bits (120), Expect = 6e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | ||| | |||| || | || |||||| || || |||||||| || Sbjct 24150851 TCCTCCCCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 24150910 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| |||| || |||||||| || ||||| || || ||||||||||| | ||| Sbjct 24150911 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 24150970 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||||| ||| | || | || | | | | ||||||| ||||| | Sbjct 24150971 GATACCTTCCTTGTCC-TGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGA 24151029 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 | || | || || || || |||||||| || || |||||||| |||||||| Sbjct 24151030 CCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 24151081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || |||||| ||||| || || |||||| Sbjct 16960473 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCC 16960532 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || || || || | ||||||||||| | || Sbjct 16960533 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 16960592 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | || || ||||| |||||| ||| | ||| | | | |||||| ||| || Sbjct 16960593 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---TC 16960648 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 16960649 CACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960699 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| ||||||||||| | || |||||| ||||| ||||| ||||||| || || | Sbjct 16984255 ACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGACC 16984314 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || | | ||||||||| | || | || ||||| Sbjct 16984315 ATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCCTT 16984374 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCG 43143 |||| || | || | | | ||| | | | |||||| ||| ||||| || | | Sbjct 16984375 GTCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTC---TCCACCTCTAGAG 16984430 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || ||||| |||||||| ||||| Sbjct 16984431 TAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCAT 16984470 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||||||||||| || | || || ||||| || |||||||| Sbjct 26352611 CCTTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTCGAGCTGTTTTCCAGCGAAG 26352552 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||||||| || | || | | || ||||| ||| || |||| | Sbjct 26352551 ATCAATCGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTG 26352492 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || || || |||| |||||||| || || || || || || || Sbjct 26352491 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACG 26352432 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 26352431 AAGATCTGCATCTTT 26352417 >seq1 Length=28635137 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || |||||| ||||| |||||||||||| Sbjct 22221420 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGCC 22221479 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| | || || | ||||| |||||||| || || | ||||||||||| || Sbjct 22221480 AAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGA 22221539 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | | |||||||||| |||||| ||| | ||| | | | |||||| ||| || Sbjct 22221540 ATACCCTCCTTGTCCTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---TC 22221595 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||| || || || || | ||||| || ||||||||||| Sbjct 22221596 CACCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 22221646 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| ||||| || | || |||||| || || |||||||| ||| Sbjct 22221648 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAATCTGCC 22221707 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 22221708 AAGGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 22221767 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCAC 43135 | | ||| ||||| ||| || ||||| ||| | || |||||| ||| || Sbjct 22221768 ATACCCTCTTTGTCTTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCGGAGCTTTCAAC 22221826 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || || ||||| | ||||| || ||||||||||| Sbjct 22221827 CTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 22221874 >seq7 Length=22597724 Score = 116 bits (128), Expect = 4e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | || | |||||| || | || |||||| || || ||||| || || Sbjct 8143598 TCCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 8143657 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || |||| | |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 8143658 GAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 8143717 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||||| ||| | || | || | | | | ||||||| ||||| | Sbjct 8143718 GATACCTTCCTTGTCC-TGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGA 8143776 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || | || || || || |||||||| || || |||||||| ||||||||| Sbjct 8143777 CCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 8143829 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 13483592 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAA 13483533 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 13483532 GATGAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 13483474 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| || ||||| || || || | Sbjct 13483473 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCA 13483414 Query 43171 CAAAGATTTGCATTTTTACGCCG 43193 | ||||| ||||| ||| || || Sbjct 13483413 CGAAGATCTGCATCTTTGCGGCG 13483391 >seq4 Length=18984343 Score = 114 bits (126), Expect = 1e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || |||| | |||| || |||||||| || ||||| Sbjct 357501 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 357560 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | ||| | || |||||||| ||| || |||| ||| Sbjct 357561 GATCAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 357619 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| ||||| ||||| |||||||| || || | Sbjct 357620 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCA 357679 Query 43171 CAAAGATTTGCATTTTT 43187 | ||||| ||||| ||| Sbjct 357680 CGAAGATCTGCATCTTT 357696 >seq6 Length=26286742 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | || |||||| |||| || | || |||||| || ||||||||||||||| Sbjct 15796498 CCTCCACGTAGACGCAAGACCAGGTGAAGCGTAGACTCCTTCTGGATATTGTAATCAGCC 15796439 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| |||| || | |||||| || ||||| ||||| | |||||| || | || Sbjct 15796438 AAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGA 15796379 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | || ||||||||| ||| | || | || | ||| | | | ||||| ||| ||| Sbjct 15796378 ATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 15796323 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| || || || || || || |||||||| ||||| Sbjct 15796322 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 15796272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || |||| ||| || | || || ||||| || |||||||| Sbjct 15796919 CTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAA 15796860 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||| ||| || || | ||| Sbjct 15796859 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGT 15796801 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | |||||| || ||||| || | |||| Sbjct 15796800 TGTCAATAGTGTCGGAGCTC---TCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCT 15796744 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 15796743 TAACGAAAATCTGCAT 15796728 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || || | || || | || || Sbjct 15797848 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 15797789 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||| | Sbjct 15797788 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 15797729 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || || | ||| | | | ||||| |||| ||||| || | |||||| || Sbjct 15797728 ATCTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTC---TCCACCTCAAGCGTGATCGT 15797673 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| || || || ||||| Sbjct 15797672 CTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 15797640 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | ||| ||| || || || ||||| || || | || || | Sbjct 18962226 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCTAAGGTGCGACC 18962167 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 18962166 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 18962107 Query 43088 GTC 43090 ||| Sbjct 18962106 GTC 18962104 >seq10 Length=17599535 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 17168328 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 17168269 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 17168268 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 17168210 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| |||||||| ||||| || | |||| Sbjct 17168209 TGTCAATAGTGTCGGAGCTC---TCAACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCT 17168153 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 17168152 TGACAAAGATCTGCAT 17168137 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 17168100 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 17168041 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | | ||||||||| ||| || |||| | Sbjct 17168040 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 17167981 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || |||| || ||||| ||||| || ||||| || Sbjct 17167980 ATCGATGGTGTCAGAGCTC---TCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTTTT 17167924 Query 43169 TACAAAGATTTGCAT 43183 || || |||||||| Sbjct 17167923 CACGAAAATTTGCAT 17167909 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | || |||||| || || ||||||||||||| ||||| | Sbjct 17168808 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACC 17168749 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || ||||| ||||||||||| ||||||| ||| ||||| | || | | ||||| Sbjct 17168748 ATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTT 17168689 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| | || | | ||| | | | |||||| |||| || || || | | Sbjct 17168688 GTCC-TGAATCTTAGCCTTCACGTTGTCTATCGTGTCTGAGCTC---TCAACTTCCAAGG 17168633 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || ||||| || | ||||| ||||| ||||||||| Sbjct 17168632 TTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATT 17168592 >seq8 Length=21613650 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||||||||| ||||| || || || || || | Sbjct 12585463 ACGCAACACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACC 12585404 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 12585403 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGTCTTCCTT 12585344 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| || |||| | | | ||||| |||| ||||| || | || Sbjct 12585343 GTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCCGAGCTC---TCCACCTCCAGTGT 12585287 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || |||| |||| |||||||| ||||| Sbjct 12585286 GATGGTCTTTCCGGTTAAGTTCTTGACAAAGATCTGCAT 12585248 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | | ||||||| || || ||||| ||||| Sbjct 12585018 CCTCCACGAAGACGCAACACCAAGTGGAGATTAGTCTCCTTCTGGATGTTGTAGTCAGCG 12584959 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || |||||||| || ||||| || | | |||||| || | || Sbjct 12584958 AGAGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGGGGA 12584899 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||||| ||| ||| || ||||| ||| | | | |||||| |||||| Sbjct 12584898 ATGCCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCCAC 12584840 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 12584839 CTCGAGGGTGATCGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 12584792 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | |||||||||||| || | || |||||| || || ||||| |||||| Sbjct 12585246 CCTCCACGCAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 12585187 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| | |||| || |||||||| || ||||| || | | ||||||||| | || Sbjct 12585186 AGAGTTCTACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 12585127 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | | |||||||| ||| || ||| | ||| | | | |||||| ||| || Sbjct 12585126 ATCCCTTCCTTGTCTTGGATCTTGGCTTTCA-CGTTGTCGATTGTGTCGGAACTC---TC 12585071 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 12585070 GACCTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 12585020 >seq5 Length=23960834 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 16975519 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACC 16975460 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 16975459 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 16975400 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| || |||| | | | |||||| |||| || || || | || Sbjct 16975399 GTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTC---TCGACCTCCAGTGT 16975343 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || | ||||| |||||||||||||| Sbjct 16975342 GATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 16975304 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| ||||| | ||| | || |||||| ||||| ||||| || ||| Sbjct 16975302 CCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCC 16975243 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || | |||||| || || || || | ||||||||||||| ||| Sbjct 16975242 AATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG 16975183 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| || || |||| | | | ||||| |||| ||| Sbjct 16975182 ATTCCCTCCTTGTCCTGTATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCC 16975126 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| || || ||||||| ||||| |||||||| ||||| Sbjct 16975125 ACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 16975076 >seq3 Length=31725688 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 11141059 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAA 11141000 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 11140999 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11140940 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || |||| ||||| || || ||||| || || || || Sbjct 11140939 GTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTCAC 11140880 Query 43172 AAAGATTTGCATTTTT 43187 ||||| ||||| ||| Sbjct 11140879 GAAGATCTGCATCTTT 11140864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| || | ||| |||||| || || ||||| || ||| Sbjct 13311654 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 13311595 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 13311594 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 13311535 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | || |||||||| ||| || || | ||| | | | ||||| |||| || Sbjct 13311534 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---TC 13311479 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||| ||||| || | ||||| || || || ||||| Sbjct 13311478 CACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCAT 13311428 >seq28121 Length=117 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| ||||||| | || |||||||||||||| ||||| Sbjct 116 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTCCTTCCATCCTCTAGCTGCTTACCGGCGAA 57 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| | |||||| || | || | || ||||||||| ||| || Sbjct 56 GATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 9 >seq26880 Length=258 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||||| |||| | || || | ||||| |||||||| Sbjct 125 CTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAA 66 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || | ||||||||||| || | | |||||||||| |||||| Sbjct 65 GATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATTTT 18 >seq23325 Length=170 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||| || || ||||| || | || || Sbjct 38 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGACCATCCTCA 97 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || ||||| ||||||||||| | || | || ||||||||| | Sbjct 98 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 157 Query 43095 ATTTT 43099 || || Sbjct 158 ATCTT 162 >seq11563 Length=123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 119 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 60 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || | ||||||||| | || | | ||||||||| ||| || Sbjct 59 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571529911417720