Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 9e-12 >seq7 Length=22597724 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| ||||| || || ||||| || | || || ||||| || || || || Sbjct 5292549 GTGCCACCCCTAAGCCTCAAGACCAAGTGAAGCGTTGACTCTTTCTGGATGTTGTAGTCC 5292490 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| |||| ||| || ||||| || |||| || || |||||||| Sbjct 5292489 GCAAGGGTTCTACCATCTTCTAGTTGCTTCCCAGCGAATATCAGCCTCTGTTGATCCGGC 5292430 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 5292429 GGTATTCCTTCTTTGTCCTG 5292410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743152322574080