Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 123 5e-23 seq3 98.7 2e-15 >seq1 Length=28635137 Score = 123 bits (136), Expect = 5e-23 Identities = 148/198 (75%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| || ||| | |||| || ||| |||| ||||||||| || ||| | | Sbjct 1752163 AGAACAATCCTGACGATCGCCGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 1752222 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 1752223 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTT 1752282 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || |||| || || || || || || Sbjct 1752283 CATGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTGGGTGTACCGTTTAACATCGC 1752340 Query 35695 ATCATACTCTCTTCTGAC 35712 || ||||| ||||| || Sbjct 1752341 CTCGTACTCCCTTCTTAC 1752358 >seq3 Length=31725688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/199 (72%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | | || ||||| ||| || || | | Sbjct 20592966 AGAACAATCCTGATGATCGGCGTATCATATTATCTGCTTGGAACCCTTCTGACCTCAAGC 20592907 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| || ||||| ||||||||| ||| || || |||||||| | || || | | Sbjct 20592906 TGATGGCGCTGCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCT 20592847 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | |||||| |||||||||| |||||| ||| | | || ||||| || || ||||| Sbjct 20592846 CATGCCAGATGTATCAGCGTTCAGCGGATATGA--GCCTTGGTGTGCCGTTTAACATTGC 20592789 Query 35695 ATCATACTCTCTTCTGACT 35713 || ||||||||||| ||| Sbjct 20592788 TTCCTACTCTCTTCTTACT 20592770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989073681117795