Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 seq8 95.1 2e-14 >seq6 Length=26286742 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||||| | ||| ||||| || || || |||||| | ||| | || || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| |||||||||| ||| | | |||||| | ||| ||| | || | Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||| || || ||||| |||| ||| |||||| || |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 >seq8 Length=21613650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 16023299 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 16023358 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | ||||| || || || ||| Sbjct 16023359 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 16023418 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || |||| || | ||| || ||| ||||| ||||| || Sbjct 16023419 AACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATAT 16023478 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 16023479 TCCCTCGATGCTATCATCCTTCATG 16023503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629500730892720