Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq3 104 2e-17 >seq1 Length=28635137 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||| ||||||| | | | || || |||| ||| ||||||||||||||| || || || Sbjct 1752377 GACATGAGCGAGGATACATGTAAGAAGGGAGTACGAGGCGATGTTAAACGGTACACCCAG 1752318 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 1752317 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTTGCAACGTAAAA 1752258 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| || ||||| | || ||||| || Sbjct 1752257 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 1752198 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || || ||||||| Sbjct 1752197 CGACATTATAATCCGGCGATCGT 1752175 >seq3 Length=31725688 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 || ||||| | || | || || || | |||| || ||||||||||| || || ||| Sbjct 20592753 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 20592812 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 | ||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 20592813 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 20592872 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || |||||| | |||||||| || Sbjct 20592873 TG-CGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGC 20592931 Query 21179 GCACATAACGATGCGCCGATC 21199 | | | ||| |||||||| Sbjct 20592932 AGATAATATGATACGCCGATC 20592952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || || | ||| |||| || || || Sbjct 29591356 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGA 29591415 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || ||||||||||| || | ||| |||||||| || |||||| | Sbjct 29591416 GAGCTCTCCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 29591475 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 29591476 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATTATCCGGCGATC 29591520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427566161033520