Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 seq8 118 2e-21 >seq6 Length=26286742 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||||| | ||| ||||| || || || |||||| | ||||| || || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || || | |||||| | ||| ||| | || | Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||| || || ||||| |||| ||| |||||| || |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 79078 AATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAA 79137 || ||||| ||| | ||||| || |||||| || || | |||||||||| || | | Sbjct 24942144 AAGACTCTGCGACTATAAATGTTTGAGGTATACGGCTCAAAACATTCATTATTCCCAAGA 24942203 Query 79138 ATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTAT 79197 || || ||||| || |||||||| ||||| || || | | |||||||| || | | Sbjct 24942204 ATCTGGCTGGTTGAAGCAGTTGGCATTGGTGCTACTAAAAGAGAATTTCTAATTCCAT-T 24942262 Query 79198 GATCTGATTT-TATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCA 79256 || | | ||||| | |||| |||| ||||| |||| || || | |||||||| Sbjct 24942263 CTTCGAAATCATATCTCTGAGAGCAGCCCAGTCCCAGCGATCCGAAGGAATCACATTCCA 24942322 Query 79257 AAGATCATATTGTAGAATACC 79277 | ||| |||||||||||| Sbjct 24942323 CATGTCAGGTTGTAGAATACC 24942343 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | ||| || | ||| | || | || |||||||| ||||||| Sbjct 24943936 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACCA 24943995 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||| ||||| || || || || |||||| | ||||| || || || || Sbjct 24943996 TTAGATTCCCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGAA 24944055 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || ||||| || ||| || | || || ||| || |||||||| || Sbjct 24944056 ACACCAATACCCCCAGCTGACTTACTTATAACCGCACACTCTTTCAATGTATCATAAATC 24944115 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 24944116 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 24944156 >seq8 Length=21613650 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 16023299 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 16023358 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 16023359 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 16023418 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || |||| || | ||| || ||| ||||||||||| || Sbjct 16023419 AACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATAT 16023478 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 16023479 TCCCTCGATGCTATCATCCTTCATG 16023503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717907429988360