Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 150 3e-31 seq2 132 7e-26 >seq6 Length=26286742 Score = 150 bits (166), Expect = 3e-31 Identities = 380/565 (67%), Gaps = 26/565 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| ||||| ||||||| || ||||| | |||||| |||||||| Sbjct 22599108 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTC 22599167 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||| ||| ||||||| || | | || ||||| | || || Sbjct 22599168 TCGCAAGACACTCGCGACTGGGAGAATC---TCAACGACGGAGAGCGCCACTTCATCAAA 22599224 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| |||||| |||||||| || ||||| | || Sbjct 22599225 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTAGAGAATCTCGCCTCCCGG 22599284 Query 125199 TTC-TCTCAAGAGTTGACCATTC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || || | | || | |||| | ||||| || ||||| ||||| ||| | Sbjct 22599285 TTCATGTCC-GACGTG-CAAGTCTCCGAGGCG-CGTGCCTTCTACGGGTTCCAGATCGCG 22599341 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 |||||||| | ||||| || |||||| ||| | |||| |||||| || Sbjct 22599342 ATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTCGACACGTACATCAAGGA---- 22599397 Query 125316 CAACGTAAACACATG------CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| | | | ||||| ||| || || || | || | | || Sbjct 22599398 CAAC--AAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATCCCTTGCGTCGCGAAG 22599455 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| ||||||| || ||||||||| | || ||| |||||| || | Sbjct 22599456 AAGGCCCAATGGGCCATGAAGTGGATCGACGGATCTCAGACTTT---CGCCGAGAGGATC 22599512 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTG 125488 ||||| || || ||| || || |||||||| || || || || ||| ||||||| || Sbjct 22599513 GTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCT-CCATCTTCTG 22599571 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 ||| |||||||| || |||||||| || | || | |||||||| || |||||||| Sbjct 22599572 GCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGAGA 22599631 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 ||| ||||| ||||| ||||| ||| Sbjct 22599632 CGAAGGCCTTCACTGCGACTTCGCC 22599656 >seq2 Length=27864329 Score = 132 bits (146), Expect = 7e-26 Identities = 390/587 (66%), Gaps = 23/587 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||| |||||||| || || | |||||||| | Sbjct 22153008 TGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTTCT 22153067 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| || ||||| || ||| | ||| ||| |||||||| | | | Sbjct 22153068 GGACCGCCGAGGAAGTCGACCTCTCCCAAGACACCCGCGACTGGGAGACCAACCTCAACG 22153127 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || ||| | | |||||||| |||| |||||| ||||||| Sbjct 22153128 ACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCG 22153187 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| ||||| | || ||| | || || | ||| |||| | ||||| Sbjct 22153188 TCCTCGAGAATCTCGCCTCCCGGTTCATGTCCGACGTGCAGGTCTCC-GAGGCG-CGTGC 22153245 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTAC----TCTACAC 125289 || ||||| ||||| ||| ||||||||| | |||||||| |||||| ||| Sbjct 22153246 CTTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCGGAGATGTACAGCCTCT---- 22153301 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAA---ACACATGCTCTTTAACGCAATCG 125346 || | || | ||||| || | ||| | | || ||| ||||| ||| || | Sbjct 22153302 TGCTAGATACCTACATCAAGGA-CAACAAGGAGAGGGAC-CAT-CTCTTCCGCGCGATTG 22153358 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || | || | | || ||||| ||||||| | ||||||||||| Sbjct 22153359 AGACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGATGGATCTC 22153418 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 || ||| ||| || || | ||||| ||||| ||| || || |||||||| || | Sbjct 22153419 AGACTTT---CGCAGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCG 22153475 Query 125467 GTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | || || ||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 22153476 GAAGCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTC 22153534 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || ||||| ||||| ||||| ||||| || Sbjct 22153535 TCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGC 22153581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740686363853240