Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq6 89.7 4e-13 seq1 89.7 4e-13 >seq9 Length=37155481 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || ||||| || |||||||| || ||| | | | || || Sbjct 16960263 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCTAGGGTGCGACCATCCTCG 16960322 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||||||| || ||||| ||||| ||||||||||| Sbjct 16960323 AGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGG 16960382 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || || | || ||||| ||| | | || || |||| |||||||| || Sbjct 16960383 ATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGAGTAATGGTCTTC 16960442 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || ||||| || |||||| Sbjct 16960443 CCGGTCAGTGTCTTGACAAAGATCTGCATA 16960472 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| || | || ||||||| | || Sbjct 24150876 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGC 24150935 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| || ||||| || || ||||| ||||| ||| ||| Sbjct 24150936 TTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGAATCTTG 24150995 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| ||| || |||||||| || || || || || Sbjct 24150996 GCCTTCACATTGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTT 24151055 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| ||||| || ||||| || Sbjct 24151056 AGGGTTTTCACAAAGATCTGCATTTT 24151081 >seq6 Length=26286742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || ||||| || |||||||| || |||| | || | || Sbjct 15797395 AAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTCCTTCCATCC 15797336 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| || ||||||| | || ||||| ||| ||||| || || || Sbjct 15797335 TCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCC 15797276 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| ||| | || || || || | || || || || ||||| || Sbjct 15797275 TGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTAATCGTC 15797216 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| ||| || |||||||||||||| Sbjct 15797215 TTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15797184 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || |||||||| ||| ||| |||| | || || || || Sbjct 22221899 ATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCTTCCATCCTCCAACTG 22221958 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| || | || | | || ||||| ||| ||||| || || || || || Sbjct 22221959 CTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTT 22222018 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||||||| |||| || || || || || || || || || Sbjct 22222019 GGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACCTCCAAAGTGATCGTCTTTCCGGT 22222078 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 ||||||||| ||||| || ||| || ||||| ||||| Sbjct 22222079 CAGAGTTTTAACAAAGATCTGC--ATCTGAAATTAAAA 22222114 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTC 15210 || || || ||||| || || || || || ||||||||||| || || | || | || Sbjct 22221435 AAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGCCAAG-GTCCTGCCATC 22221493 Query 15211 TTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC 15270 ||| ||||| || |||||| | || | | || |||||| ||||| || || ||||| Sbjct 22221494 TTCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTC 22221553 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 |||||| || || | || ||||| ||| | | || || |||| || || || Sbjct 22221554 CTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGT 22221613 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||| ||| || || || |||||||| Sbjct 22221614 CTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 22221646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362001538539309