Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq3 89.7 4e-13 seq1 89.7 4e-13 seq10 86.0 5e-12 seq9 86.0 5e-12 >seq6 Length=26286742 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || ||||||||||| |||| || || |||| Sbjct 15796483 AAGACCAGGTGAAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCT 15796424 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| || || || | || || ||||||||||| || | ||| || ||||| Sbjct 15796423 TCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 15796364 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATG 19006 ||| || ||| || | | ||| || | ||| || ||| || | ||| ||| Sbjct 15796363 TGAATCTTGGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCCACCTCAAGGGTGATG 15796307 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || || || || | ||||| ||||| || ||||| | ||| Sbjct 15796306 GTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCATCTGAAA 15796266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||||| ||||| ||| | ||||||||||| || || ||||| |||||| Sbjct 15796726 CCACCACGAAGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCC 15796667 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| |||||||| || || | || || |||||||| || || Sbjct 15796666 AAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGAGGA 15796607 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||||| ||| || | | | | || ||| | |||| Sbjct 15796606 ATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACC 15796547 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || ||||||||||| || || || || ||||| Sbjct 15796546 TCTAGCGTGATCGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 15796500 >seq3 Length=31725688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || || ||||| || ||| Sbjct 13310970 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 13310911 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || || | ||||| |||||||||||| || Sbjct 13310910 AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 13310851 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || || || | | ||| || ||| |||| Sbjct 13310850 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 13310791 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | |||||| || || || ||||| Sbjct 13310790 TCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 13310744 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| ||||| |||||||| |||| || || | || Sbjct 22221435 AAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTGCCATCT 22221494 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| || || || || | ||||| |||||||| || || | ||||| ||||| Sbjct 22221495 TCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCC 22221554 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| ||| || | | | | || ||| | |||| || | || || || Sbjct 22221555 TGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTC 22221614 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| ||||| ||||| || |||||||| Sbjct 22221615 TTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 22221646 >seq10 Length=17599535 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||| | ||| | ||||||||||| |||||||| |||||||| | || | ||| Sbjct 17168576 AACACAAGGTGAAGGGTAGACTCCTTCTGAATATTATAATCCGCAAGCGTACGACCATCC 17168517 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || |||||||| || || | || ||||||||||| || || | ||| || ||||| Sbjct 17168516 TCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCC 17168457 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | | | || || ||| || | |||||| ||| Sbjct 17168456 TGAATCTTTGCTTTGACGTTGTCAATCGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTT 17168397 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || |||||||| || ||||| Sbjct 17168396 TTACCGGTCAAGGTCTTGACAAAGATCTGCAT 17168365 >seq9 Length=37155481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | || |||| ||| | ||||||||||| || ||||||||||| || Sbjct 16984472 CCTCCACGCAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCG 16984531 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || ||||||| ||||| ||||| ||| | || | | |||||| || || Sbjct 16984532 AGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGA 16984591 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || ||| || | | ||| || ||| |||| Sbjct 16984592 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 16984651 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || || || || || || | ||| || ||||| || ||||| Sbjct 16984652 TCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 16984698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369437661106