Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 5e-11 >seq6 Length=26286742 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | || ||||| ||||| || | ||||||||||| || || ||||| |||| Sbjct 15797411 ACCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGC 15797352 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || ||||| ||||| || |||||| || | |||||||||| || Sbjct 15797351 TAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGG 15797292 Query 33262 TATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || || || || |||| ||| || || | | ||| ||||| | | Sbjct 15797291 GATTCCCTCCTTATCCTGAATCTTGGCC---TTGACATTATCAATAGTGTCAGAGCTCTC 15797235 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||| ||| ||||| || ||||| | ||| || || |||||||||||| Sbjct 15797234 CACCTCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCATG 15797183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318621228529602