Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 >seq6 Length=26286742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| ||||| || || || ||||||||||||| ||||||||| | || | || || | Sbjct 15797340 CATCCTCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCT 15797281 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||| || ||||| || ||| ||| || | |||||| || | |||| Sbjct 15797280 TATCCTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTAA 15797221 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || || || |||||||| ||||| ||||||||| Sbjct 15797220 TCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCATG 15797183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354603569280852