Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq8 138 3e-27 seq3 136 9e-27 seq7 132 1e-25 seq9 131 4e-25 seq10 120 7e-22 seq5 111 4e-19 seq23325 91.5 3e-13 seq1 89.7 1e-12 >seq6 Length=26286742 Score = 141 bits (156), Expect = 2e-28 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || |||| | || || |||||||| | || ||||| Sbjct 15796468 GTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCTTCCAACTGCTTTCCG 15796409 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || |||||||| ||||||||||| || ||||| || ||||||||||| ||||| Sbjct 15796408 GCGAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTA 15796349 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | ||| || ||| ||| ||||| || || || ||||| || || || Sbjct 15796348 ACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGG 15796292 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 15796291 GTTTTCACAAAGATCTGCAT 15796272 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | ||||| || ||||| || || ||||||| ||||| || Sbjct 15797173 AGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTT 15797114 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || || ||||| || |||||||| || || || || ||||| || Sbjct 15797113 CCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATTCCCTCC 15797054 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 |||||||||||||| || || ||||| || | || || || | || ||||| | || Sbjct 15797053 TTATCCTGAATCTTGGCCTTGACATTATCAATAGTGTC-AGAGCTCTCCACCTCCAAAGT 15796995 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || | || || ||||| || ||||| Sbjct 15796994 AATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15796956 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||||| |||||| || || || || | || || || Sbjct 15797380 GTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTCCTTCCATCCTCCAACTGCTTGCCG 15797321 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || ||||| || |||||||||||||| || || Sbjct 15797320 GCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTG 15797261 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| | ||||| ||||| || || | || Sbjct 15797260 ACATTATCAATAGTGTC-AGAGCTCTCCACCTCCAAAGTAATCGTCTTCCCCGTCAAAGT 15797202 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 15797201 CTTGACAAAAATTTGCAT 15797184 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | ||||| || ||||| || || ||||| | | ||| | | Sbjct 15797629 AGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGA 15797570 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || ||||| ||||| || || || | ||| || || ||||| || ||||| Sbjct 15797569 CCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCC 15797510 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || || || ||||| || || || || || | || || | || ||||| | ||| Sbjct 15797509 TTGTCTTGGATCTTGGCCTTCACTTTATCAATAGTGTCCGAACTCTCAACCTCCAATGTG 15797450 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| || || |||||||||||||| Sbjct 15797449 ATGGTCTTGCCGGTAAGGGTCTTCACAAATATCTGCAT 15797412 Score = 104 bits (114), Expect = 5e-17 Identities = 230/340 (68%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 268946 TTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATA 269005 || ||||| |||||||| || || || ||||| || |||||||||||||| || | | Sbjct 22599321 TTCTACGGGTTCCAGATCGCGATTGAGAATATCCACTCAGAGATGTACAGCCTCCTGCTC 22599380 Query 269006 GATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATG 269065 || || || || | || ||||| || | | | || || | || ||| || Sbjct 22599381 GACACGTACATCAAGGACAACAAAGAGAGGGACCACCTCTTCCGCGCGATTGAAACCATC 22599440 Query 269066 GACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGC-GCCTTA 269124 || || || || | ||||||| |||| ||||| ||| | | | | ||| Sbjct 22599441 CCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGACGG-ATCTCAGACTTT 22599499 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT-CTTTTG 269183 || || ||| | || || ||||| || ||||| || ||||| || || ||| || Sbjct 22599500 CGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTG 22599559 Query 269184 CCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAAT 269243 | | ||||| ||| ||||||| |||| || ||||| || ||||| ||||| ||||| | Sbjct 22599560 CTCC-ATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGT 22599618 Query 269244 TGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||| | |||||||| | |||||||||||||| || Sbjct 22599619 TGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCCTG 22599658 >seq8 Length=21613650 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||||| ||||||||||||||||| || || ||||| || || Sbjct 12584982 TCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAAG 12584923 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | |||||| ||||| || || || ||||| |||||||| ||||| ||||| || || Sbjct 12584922 ATCAACCTCTGCTGATCCGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTG 12584863 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| ||| ||||| || || || ||||| || || || || || || Sbjct 12584862 TCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGAGTCTTAACG 12584803 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 12584802 AAGATCTGCAT 12584792 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || || || ||||| || || | || | || || ||||||||||| || ||||||| | Sbjct 8932583 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 8932524 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || |||| ||| || || |||||||| |||||||| || ||||||||||||||||| ||| Sbjct 8932523 AGCGTTCGACCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATCAGGTGGT 8932464 Query 104453 ATTCCTTCTTTATCCTG 104469 || || ||||| ||||| Sbjct 8932463 ATCCCCTCTTTGTCCTG 8932447 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||||| ||||||||||||||||| || || || || Sbjct 12585216 GTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTTCTACCGTCTTCAAGCTGCTTGCCG 12585157 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | |||||| || || ||||| || ||||| || || || ||||| ||||| Sbjct 12585156 GCGAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTC 12585097 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| | || ||||| || || || ||||| || || | || Sbjct 12585096 ACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGGGTGATCGTCTTTCCGGTCAAGGTC 12585037 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 12585036 TTGACGAAGATCTGCAT 12585020 >seq3 Length=31725688 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || | || | ||||| || ||||| || || ||||||| | ||||| Sbjct 13310961 AGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 13310902 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | || || || || || || |||||||| ||||| ||||| ||||| || Sbjct 13310901 CCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCC 13310842 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 |||||||||||||| || || || || || | ||| ||| || | || ||||| || || Sbjct 13310841 TTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCG-GAGCTCTCCACCTCGAGGGT 13310783 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || ||||| || || |||||||| Sbjct 13310782 GATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 13310744 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || || || | || ||||||||||| || |||||||||| | ||| | | Sbjct 13311417 AGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCCAAAGTACGA 13311358 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || ||||| ||||| || || |||||||| || || ||||| || || ||| Sbjct 13311357 CCATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCTGGAGGAATACCCTCT 13311298 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| || || ||||| || || || | ||| ||| | || |||||||| || Sbjct 13311297 TTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTG 13311238 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || | || || || || |||||||| Sbjct 13311237 ATCGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 13311200 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || || || | | || | ||| ||||| | || ||||| Sbjct 13311168 GTTGACTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGCTTTCCG 13311109 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || ||||| || |||||||| ||||| || || Sbjct 13311108 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTA 13311049 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| | || |||||||| || || | || Sbjct 13311048 ACATTGTCAATAGTGTC-AGAGCTCTCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGT 13310990 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 13310989 CTTGACAAAGATCTGCAT 13310972 >seq7 Length=22597724 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | || || | || | || || || ||||| || || ||||| | Sbjct 8143598 TCCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 8143657 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || || |||||||| || || || || || || || || | ||| || || ||||| Sbjct 8143658 GAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 8143717 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || ||||||||||| || || ||||| || | || ||| | ||| || Sbjct 8143718 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGAC 8143777 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||| || || ||||| || || || ||||| ||||| ||||||||||| Sbjct 8143778 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 8143828 Score = 113 bits (124), Expect = 1e-19 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || ||||| | || |||||||| ||||||||||| || ||| Sbjct 5292516 GTTGACTCTTTCTGGATGTTGTAGTCCGCAAGGGTTCTACCATCTTCTAGTTGCTTCCCA 5292457 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || |||||||||||||| || |||||||||||||| ||||| Sbjct 5292456 GCGAATATCAGCCTCTGTTGATCCGGCGGTATTCCTTCTTTGTCCTG 5292410 >seq9 Length=37155481 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| || || || || || ||||| || ||||||| || || | Sbjct 16960938 AGCCTGAGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTGTAGTCAGCGAGGGTACGC 16960997 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || || ||||| || | || || ||||| |||| || |||||| Sbjct 16960998 CCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCTGAGGAATACCTTCT 16961057 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 |||||||||||||| ||||| || || || | |||||| || | || ||||| | || Sbjct 16961058 TTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTATC-AGAGCTCTCCACCTCCAAAGT 16961116 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || ||||| || || || |||||||| Sbjct 16961117 GATCGTCTTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 16961155 Score = 129 bits (142), Expect = 1e-24 Identities = 147/196 (75%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || ||||||| ||||| | || ||||| || ||||||||||| || | Sbjct 26352610 CTTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTCGAGCTGTTTTCCAGCGAAGA 26352551 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | ||| ||||| ||||| || |||||||| || || ||||| || || ||||| | Sbjct 26352550 TCAATCGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 26352491 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||| ||| | || ||||| || || || ||||| || || || ||||| || | Sbjct 26352490 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACGA 26352431 Query 104550 ATATCTGCAT-TTTGT 104564 | |||||||| ||||| Sbjct 26352430 AGATCTGCATCTTTGT 26352415 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || ||||| || || ||||||| ||||| | Sbjct 16984709 AGCCTGAGGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGAGTACGT 16984768 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || ||||| || || || || || ||||| || ||||| || || ||||| || Sbjct 16984769 CCATCCTCGAGTTGCTTCCCGGCGAAGATAAGCCTTTGCTGATCCGGTGGGATTCCCTCC 16984828 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||||||||| || || || || || | ||| ||| ||| ||||| || || Sbjct 16984829 TTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTG 16984888 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || |||||||| Sbjct 16984889 ATGGTCTTTCCTGTGAGAGTCTTAACGAAGATCTGCAT 16984926 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || || || | || || || ||||| || || || || | Sbjct 24150851 TCCTCCCCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 24150910 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || || |||||||| || || || || || || || || | ||| || || || || Sbjct 24150911 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 24150970 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || ||||||||||| || || ||||| || | || ||| | ||| || Sbjct 24150971 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGAC 24151030 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||| || || || ||||| ||||| ||||||||||| Sbjct 24151031 CTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 24151081 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| |||||||||| | || | ||| || || || || || || Sbjct 16960731 GTAGACTCCTTCTGAATGTTATAGTCAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCG 16960790 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| ||||| ||||| || || || || ||||| ||||| || || Sbjct 16960791 GCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTAGCCTTG 16960850 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||| | || ||||| | ||||||||||| || || | ||| Sbjct 16960851 ACGTTGTCAATAGTATCTGAACTCTCCACCTCCAAAGTAATAGTCTTTCCGGTTAATGTC 16960910 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 16960911 TTAACGAAGATTTGCAT 16960927 >seq10 Length=17599535 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||||||||| || | || || | ||| || || || ||||| ||| Sbjct 17168561 GTAGACTCCTTCTGAATATTATAATCCGCAAGCGTACGACCATCCTCAAGCTGTTTCCCA 17168502 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || || || || || ||||| || ||||||||||||||||| Sbjct 17168501 GCGAAGATGAGTCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCTTTG 17168442 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| | ||||| || ||||| || | || Sbjct 17168441 ACGTTGTCAATCGTGTC-AGAGCTCTCAACCTCCAAGGTAATTGTTTTACCGGTCAAGGT 17168383 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 17168382 CTTGACAAAGATCTGCAT 17168365 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || |||| | ||| ||||| || || || ||||| ||| Sbjct 17168789 GTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGTTTACCA 17168730 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || |||||||| || ||||| || ||||| || ||||||||||| || || Sbjct 17168729 GCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTAGCCTTC 17168670 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || |||| || || || | || || || | || |||||||| || || | || Sbjct 17168669 ACGTTGTCTATCGTGTC-TGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTCAAAGT 17168611 Query 104542 TTTTACAAATATCTGCATT 104560 || |||||||| |||||| Sbjct 17168610 CTTCACAAATATTTGCATT 17168592 >seq5 Length=23960834 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| | ||| || | ||| || || || || |||||| Sbjct 16975500 GTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCAAGCTGCTTTCCA 16975441 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || ||||| || || || ||||| || || Sbjct 16975440 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 16975381 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || | || | || ||||| ||||| || ||||||||||| | || Sbjct 16975380 ACGTTATCAATCGTGTC-CGAGCTCTCGACCTCCAGTGTGATGGTCTTACCAGTCAAGGT 16975322 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 16975321 CTTGACAAAGATTTGCAT 16975304 >seq23325 Length=170 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| ||||| | || | ||| || || ||||| || || ||||| | ||||| | | Sbjct 29 AGCCTGAGTACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGA 88 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || ||||||||||| || || | ||| || || ||||| || ||||| Sbjct 89 CCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCC 148 Query 104462 TTATCCTGAATCTTTGCTTT 104481 || ||||| ||||| || || Sbjct 149 TTGTCCTGGATCTTAGCCTT 168 >seq1 Length=28635137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || || || | | || | ||| || || || || |||||| Sbjct 22221678 GTAGACTCCTTCTGGATGTTGTAATCTGCCAAGGTGCGACCATCCTCCAGCTGCTTTCCA 22221737 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || || || || || || ||||| || || ||||| ||||| Sbjct 22221738 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTG 22221797 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| ||| ||||| | || |||||||| || || | || Sbjct 22221798 ACGTTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATAGTCTTTCCCGTCAAAGTC 22221857 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 22221858 TTAACGAAGATTTGCAT 22221874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150804634999292