Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq40249 576 4e-160 seq24705 553 5e-153 seq10 113 1e-20 seq2 89.7 1e-13 >seq40249 Length=153482 Score = 576 bits (638), Expect = 4e-160 Identities = 728/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || ||||| || ||||| ||||| | || |||||||| || | Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| | ||||| |||| || || || || || Sbjct 1282 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 1223 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || | | |||||||||||| Sbjct 1222 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 1163 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | |||| | || || || || |||| ||||| |||||| Sbjct 1162 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 1103 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | | ||||| ||| |||||||||| ||||| ||| |||| |||| Sbjct 1102 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATTGTT 1043 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||| ||| | || ||||| || ||| | |||||||||| || | | Sbjct 1042 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 983 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 982 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 923 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || || Sbjct 922 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 864 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 |||||||||||| ||||||||| | |||||||| || || ||||| || |||||||| || Sbjct 863 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 804 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 803 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 744 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 |||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 743 TTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 684 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | ||||| ||||| ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 683 TTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGG 624 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || ||||||||| |||||| ||||||||||||||||||||||| | || Sbjct 623 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 564 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 ||| || || || || || ||| |||| | | || || | |||||||||||||| Sbjct 563 GGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAA 504 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 ||| |||||||| || || ||||| |||||||||||| ||||| ||| | || | Sbjct 503 CCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA-GGACGTGTTATTAATA 445 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || | |||||||| || | ||||||||||| || || |||| Sbjct 444 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 385 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCGGCTGAG 20282 |||| |||||||| || || ||||| | | |||| Sbjct 384 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 >seq24705 Length=1162 Score = 553 bits (612), Expect = 5e-153 Identities = 705/964 (73%), Gaps = 5/964 (1%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || || || ||||| | || ||||| || || | ||||| ||| Sbjct 200 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 259 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| ||||||| ||||| || || || |||||| Sbjct 260 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 319 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||||| ||| Sbjct 320 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 379 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | | || | || || || ||| |||||||||| || || |||||||| Sbjct 380 GGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 439 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| || ||||| ||| | || |||| | |||| | Sbjct 440 GCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTCC 499 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| || ||| | |||||||||| || | | | || ||| Sbjct 500 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 559 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 560 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTT 618 Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | ||||||| |||| ||||| || ||| ||||||||||||| | || ||||||||||| Sbjct 619 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 678 Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 ||| ||||||||| | |||||||| || || ||||| || |||||||| || || ||||| Sbjct 679 TTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACAT 738 Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897 | | ||||| ||||| |||||||| || || || || ||||||||| || |||||| Sbjct 739 GTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGT 798 Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957 |||| || | | ||| |||||| ||||| ||| ||| || | || || || || Sbjct 799 AACTT-CTAGTTTGTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATT 857 Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017 || ||||| ||||| || ||||||||||| ||||| || || || ||||| |||| || Sbjct 858 TGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAAT 917 Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077 || ||||||||| |||||| || |||||||||||||| ||||| | ||| ||| || Sbjct 918 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 977 Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || || || || ||| | || | | || || | ||||||||||||||||| ||||| Sbjct 978 TGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 1037 Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTG 20196 ||| || || ||||| || ||||||||| ||||| || | || || ||||||| Sbjct 1038 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGCGTTATTAATACTTGGGCTG 1096 Query 20197 ATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACT 20256 || | | || | |||||||| || | ||||| |||||||| || |||||||| |||| Sbjct 1097 ATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 1156 Query 20257 TCCC 20260 |||| Sbjct 1157 TCCC 1160 >seq10 Length=17599535 Score = 113 bits (124), Expect = 1e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| ||||||||| | ||||||| || || ||||| || |||||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || || ||||| | ||||| | ||| |||||| |||| || | || || |||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || |||||| ||||| | || | | |||| || | ||| ||| ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 19996 | |||| ||||| ||||| ||||| || || || ||||| |||| || Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 >seq2 Length=27864329 Score = 89.7 bits (98), Expect = 1e-13 Identities = 79/96 (82%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 19696 CAGCAGCTCTTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGT 19754 |||| ||| |||||| ||||| | | |||||| |||| ||| | || ||| ||||||| Sbjct 14827016 CAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTCAAAGAAGATTTTCTGATGGT 14826958 Query 19755 ATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 19790 |||||||| || |||||||||||||| ||||||||| Sbjct 14826957 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 14826922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144372563144244