Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24705 520 1e-142 seq40249 509 3e-139 seq38010 104 4e-17 >seq24705 Length=1162 Score = 520 bits (576), Expect = 1e-142 Identities = 678/931 (73%), Gaps = 5/931 (1%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || ||||| |||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 233 GGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTAT 291 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || |||||||| || ||||| || ||||| || || || ||||| || || ||||||| Sbjct 292 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 351 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 || | ||||| ||||| || ||||||||||| || | || |||| || ||||| Sbjct 352 TTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATCCCTACTTCTGCGGCGATCGG 411 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || ||||| || || || |||||||| ||| || ||||||||||| | ||||||||||| Sbjct 412 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGG 471 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTA-TCGGAATCTCAGCATACATGGGAAGAC 211909 |||||| || | | | | |||| ||||| | || | | || ||||| | Sbjct 472 TCCTTATGAGCTAATTGTTCTACACT-CCTTACTTGGTGTAGCTTGTTATATGGGTCGTG 530 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| | Sbjct 531 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 590 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| ||| | ||||||| | ||||| || || || | Sbjct 591 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTG 650 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | |||||||||||||| || || || || |||||||| ||| | |||||||| || || | Sbjct 651 ATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 710 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 711 ACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCC 770 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 |||| ||||||||| |||||| | || || ||| || || | ||||| |||| Sbjct 771 TATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGT-TTGTCAGGGAAACTACTGAAA 829 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || || | |||||||| || || ||||| ||||| || ||||| || || | Sbjct 830 ATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGG 889 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 |||| ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 890 CTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTT 949 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 ||||||||||||| | || | |||||||| | | | ||||| || || | |||| Sbjct 950 CTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTA 1009 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 | | || ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 1010 TTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 1069 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| ||| || |||||||| |||| | | ||| | || |||||||||||||||| Sbjct 1070 AAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAG 1129 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCC 212540 | ||||||||| | ||||| ||||||||||| Sbjct 1130 TAATGCACGAACGTAATGCTCACAACTTCCC 1160 >seq40249 Length=153482 Score = 509 bits (564), Expect = 3e-139 Identities = 683/945 (72%), Gaps = 4/945 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| | ||||| Sbjct 1302 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATT 1244 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | |||||||| || || ||||| || ||||| || || || |||||||| || |||| Sbjct 1243 ATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 1184 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || || || ||||| || |||| |||| || || Sbjct 1183 TCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 1124 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || ||||||||||| ||| | ||||||| ||||| ||||| ||| Sbjct 1123 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGT 1064 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||||| | | || | | || ||||| | Sbjct 1063 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 1004 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | ||||||||||||||||| |||||| |||||||| Sbjct 1003 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 944 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || || || Sbjct 943 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 884 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 883 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 824 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || ||||| |||||||||||||| || ||| |||||| || ||| | ||||| || | Sbjct 823 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 764 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 |||| ||||||||| |||||| | || || ||| | ||| | |||||||| | Sbjct 763 CTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 704 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | ||||||| ||||| ||||||||||| || || ||||| || Sbjct 703 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTA 644 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 ||||| || || || || || || | |||||||| ||||| |||||||| | Sbjct 643 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 584 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||| |||||| | || | ||||| || | || | ||||| || || | ||| Sbjct 583 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 524 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA 212448 || | || ||||| |||||||||||||| ||||| |||||||||||||| |||||| Sbjct 523 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAG- 465 Query 212449 TCAGGTAAG-GTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGA 212507 ||| | | | ||| || |||||||| |||| || ||||| | || |||||||||||||| Sbjct 464 TCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 405 Query 212508 AGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||| | ||||| ||||||||||| || ||| |||| Sbjct 404 AGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 360 >seq38010 Length=70015 Score = 104 bits (114), Expect = 4e-17 Identities = 90/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG-GTTGTTCC 212465 ||||||||||| ||||| |||||||||||||| |||||| ||| | | | ||| || Sbjct 45327 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGAT-AGTCAAGGACGTGTTTTTAA 45385 Query 212466 TACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATG 212514 |||||||| |||| || ||||| | || ||||||||||||||||||||| Sbjct 45386 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 45434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807148908884440