Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq9 95.1 1e-14 seq7 95.1 1e-14 seq3 87.8 2e-12 seq4 82.4 7e-11 >seq5 Length=23960834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||| | || || ||||| ||||| |||||||| | || | ||| Sbjct 16974848 ATGCATATCTTTTTCAAGACCTTAACGGGAAAGACGATCACCCTTGAGGTGGAAAGCTCT 16974907 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| |||||| ||||| || || || ||||| ||||| Sbjct 16974908 GACACCATCGACAATGTTAAAGCCAAGATTCAAGACAAGGAGGGCATTCCTCCGGATCAG 16974967 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| || || ||||| || | |||| | | ||| || ||| Sbjct 16974968 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTAGCCGATTACAAC 16975027 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 || || || || || ||| | ||||| ||||| || || Sbjct 16975028 ATCCAGAAGGAGTCGACTCTACATCTCGTCCTCAGGCT 16975065 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || || || || |||||||| ||||| | || ||| || || || ||| Sbjct 4794691 GACAAAGAAGGTATTCCACCAGACCAACAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 4794632 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 || | ||| | | ||| || ||||| || ||||| |||||| | ||||| ||| || Sbjct 4794631 GACGGCCGAACCCTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTCGTCTTG 4794572 Query 26982 AGACT 26986 || || Sbjct 4794571 AGGCT 4794567 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||| | || ||||| |||||||| | || | ||| Sbjct 16974620 ATGCAGATCTTCGTTAAGACACTCACGGGAAAGACGATCACCCTTGAGGTGGAAAGCTCT 16974679 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| |||||| ||||| || || || ||||| ||||| Sbjct 16974680 GACACCATCGACAATGTTAAAGCCAAGATTCAAGACAAGGAGGGTATTCCTCCGGATCAG 16974739 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| || ||| || || ||||| || | |||| | | ||| || ||| Sbjct 16974740 CAGAGGCTCATCCTCGCCGGAAAGCAGCTCGAGGAGGGGAGAACCCTAGCCGATTACAAC 16974799 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | || || || || ||| | ||||| ||||| || || Sbjct 16974800 ACCCAGAAGGAGTCGACTCTACATCTCGTCCTCAGGCT 16974837 >seq9 Length=37155481 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | || |||||| | |||||| |||| | || || Sbjct 30362242 AAGATGCAGATCTTTGTGAAAACCCTTACGGGAAAAACAATCACCCTCGAGGTCGAGTCC 30362301 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || |||||||| Sbjct 30362302 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGAC 30362361 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || |||| |||| || ||| || || || ||||| | | | || |||||| Sbjct 30362362 CAGCAGCGACTGATTTTCGCCGGGAAGCAGCTGGAAGACGGACGCACGCTCGCCGACTAC 30362421 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| || || || || || | ||||| ||||| Sbjct 30362422 AACACCCAGAAGGAGTCGACGCTTCATCTCGTCCT 30362456 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || ||| |||||| || |||||||| || |||| ||||| Sbjct 16961095 GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCAGGATCAG 16961036 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| || || || ||||||| | | | || ||||| ||| Sbjct 16961035 CAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGGCGTACCCTCGCTGACTACAAC 16960976 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||||| || || ||| | ||||| ||||| || || Sbjct 16960975 ATTCAAAAGGAGTCAACTTTGCATCTCGTCCTCAGGCT 16960938 >seq7 Length=22597724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| | || || || | |||||| |||| | || || Sbjct 13483398 AAGATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTCGAGTCC 13483457 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 13483458 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 13483517 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || ||||||| | || ||| ||||| |||||||| | | | | || |||||| Sbjct 13483518 CAGCAGCGACTCATCTTCGCCGGGAAACAGCTCGAAGACGGCCGTACCCTCGCCGACTAC 13483577 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | ||||| ||||| Sbjct 13483578 AACATCCAGAAGGAGTCGACGCTTCATCTCGTCCT 13483612 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || || | || || || ||||| ||| Sbjct 5292413 GACAAAGAAGGAATACCGCCGGATCAACAGAGGCTGATATTCGCTGGGAAGCAACTAGAA 5292472 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | ||||| ||||| || ||||| || || | || ||||| || Sbjct 5292473 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACGCTTCACTTGGTCTTG 5292532 Query 26982 AGACTTAGAGGAGG 26995 || ||||| || || Sbjct 5292533 AGGCTTAGGGGTGG 5292546 >seq3 Length=31725688 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 || |||| ||||| | || || ||||| | || || || | |||||| ||||| | | Sbjct 11140860 AAGCAAAGATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACAATCACCCTCGAAGTCG 11140919 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | || |||||||||||| | ||||| ||||| ||||| ||||| || |||| Sbjct 11140920 AGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTC 11140979 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 | || || || |||| || | || ||| || || || || || | | | | || || Sbjct 11140980 CGGACCAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAGGACGGACGCACCCTCGCCG 11141039 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || || || || ||| |||| || ||||| Sbjct 11141040 ACTACAACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 11141079 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || ||||| ||||| ||||||| | || | || | Sbjct 13311200 ATGCAGATCTTCGTGAAGACTTTAACAGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 13311259 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| || || |||||||| || || ||||| || || Sbjct 13311260 GACACCATTGACAACGTGAAAGCCAAAATCCAGGACAAAGAGGGTATTCCTCCAGACCAG 13311319 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || || || | || |||||||| || || |||| | | | | | || |||||||| Sbjct 13311320 CAGAGGCTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTA-CTTTGGCTGACTATAA 13311378 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||| || |||||||| ||| | || ||||| || || || Sbjct 13311379 CATCCAGAAAGAATCAACTCTTCACCTGGTGCTCAGGCT 13311417 >seq4 Length=18984343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || ||| | |||||| |||| | || || Sbjct 357695 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATCACCCTCGAGGTCGAGTCC 357636 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 357635 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 357576 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | || || | || ||| || || ||||| || | || | | || |||||| Sbjct 357575 CAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGGACCCTCGCCGACTAC 357516 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || || | || || ||||| Sbjct 357515 AACATCCAGAAGGAGTCGACGCTTCACCTCGTCCT 357481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478421578963280