Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 3e-15 seq1 98.7 3e-15 seq6 91.5 4e-13 seq8 89.7 1e-12 >seq3 Length=31725688 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| |||||||| || |||| ||| || Sbjct 29591472 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTC 29591414 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 29591413 GTGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 29591354 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | | |||||| Sbjct 29591353 ATACTCACTTCTTACATGCATCCTAGCTCAT 29591323 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 20592904 ATGGCGCTGCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 20592846 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 |||||| ||||||||||| || || ||||| | |||||||| |||||||| ||||| Sbjct 20592845 ATGCCAGATGTATCAGCGTTCAGCGGATATGAGCCTTGGTGTGCCGTTTAACATTGCTTC 20592786 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | |||||| | |||| || ||||| || | Sbjct 20592785 CTACTCTCTTCTTACTTGCATGCTAGCTCATGTGTGTGATCTTGTCCCTGGTGATTTTGT 20592726 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 20592725 CCATGTCATTGGGGATGCTCATGTGTA 20592699 >seq1 Length=28635137 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| |||||||| || | || |||||| Sbjct 1752225 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTGCAAATGGAGAGCTTTC 1752283 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||| ||||| |||||||| || || Sbjct 1752284 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTGGGTGTACCGTTTAACATCGCCTC 1752343 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| | || ||||| || | |||||||| Sbjct 1752344 GTACTCCCTTCTTACATGTATCCTCGCTCAT 1752374 >seq6 Length=26286742 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/222 (71%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||| | || | ||||| |||| Sbjct 24944138 ATGAAGGATGATAGCATTGAGGGGATTTATGATACATTGAAAGAGTGTGCGGTTATAAGT 24944079 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| || || || |||||||| || | ||||| | ||||| || | | |||||||| Sbjct 24944078 AAGTCAGCTGGGGGTATTGGTGTTTCTGTTCACAACATCCGTGCTACTGGA-AGTTACAT 24944020 Query 363741 TCGCGGCAC--AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 ||| ||||| | |||| | || ||||| | ||||| ||||| || ||||| | || Sbjct 24944019 TCGTGGCACTAATGGGG--AATCTAATGGTATTGTTCCAATGCTGCGGGTGTTCAATGAT 24943962 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||| | || || ||||| || || || ||| | |||||| Sbjct 24943961 ACTGCTCGTTATGTTGACCAAGGAGGTGGCAAGAG-AAAGGG 24943921 >seq8 Length=21613650 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/224 (71%), Gaps = 11/224 (5%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | ||| || | || | ||||| |||| Sbjct 16023502 ATGAAGGATGATAGCATCGAGGGAATATATGATACGTTGAAAGAGTGTGCAGTTAT---- 16023447 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTT 363736 ||| ||| || || || || ||||| || | ||||| | |||||| | | | |||| Sbjct 16023446 AAGTAAATCAGCTGGGGGTATCGGTGTTTCAGTTCACAACATCCGTGCAACTGGA-AGTT 16023388 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || ||||| | |||| ||||| ||||| || | Sbjct 16023387 ACATTCGTGGCACAAATGGAACATCTAATGGTATTCTTCCAATGCTGCGTGTTTTCAATG 16023328 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | ||||| ||||| || ||||| ||| | |||||| Sbjct 16023327 ATACTGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 16023285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302681473174718