Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq9 114 1e-20 seq4 102 7e-17 seq7 98.7 9e-16 seq3 96.9 3e-15 seq5 95.1 1e-14 seq6 87.8 2e-12 >seq9 Length=37155481 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | || |||||| | || ||| |||| |||||| || Sbjct 30362242 AAGATGCAGATCTTTGTGAAAACCCTTACGGGAAAAACAATCACCCTCGAGGTCGAGTCC 30362301 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| |||||||| Sbjct 30362302 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGAC 30362361 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||| ||||||||| || ||| ||||| || ||||| Sbjct 30362362 CAGCAGCGACTGATTTTCGCCGGGAAGCAGCTGGAAGA 30362399 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 23980 AGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039 |||||| || ||||| | || || ||||| | || || || | || ||| |||| | Sbjct 26352410 AGCCAACAAAGATGCAGATCTTCGTGAAAACCCTGACCGGGAAGACCATCACCCTCGAGG 26352469 Query 24040 TCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATAC 24099 ||||| || |||||||||||| | ||||| ||||| ||||||||||| || | Sbjct 26352470 TCGAGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCC 26352529 Query 24100 CTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||| ||||| ||| || |||| | || || || || |||||||||| Sbjct 26352530 CTCCGGATCAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGATG 26352577 >seq4 Length=18984343 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || ||| | || ||| |||| |||||| || Sbjct 357695 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACAATCACCCTCGAGGTCGAGTCC 357636 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| || || || Sbjct 357635 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCGCCGGAC 357576 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| ||||| || | || | | || ||| || Sbjct 357575 CAGCAGCGGCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGGAGGACCCTCGCCGACTAC 357516 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 357515 AACATCCAGAAGGAGTCGACGCTTCA 357490 >seq7 Length=22597724 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | || || || | || ||| |||| |||||| || Sbjct 13483398 AAGATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACCATCACCCTCGAGGTCGAGTCC 13483457 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 13483458 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGAC 13483517 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| |||| || | || ||| || || |||||||| | | | | | || ||| || Sbjct 13483518 CAGCAGCGACTCATCTTCGCCGGGAAACAGCTCGAAGACGGCCGTACCCTCGCCGACTAC 13483577 Query 24168 AACATTCAAAAAGAATCTACAATTCAT 24194 ||||| || || || || || ||||| Sbjct 13483578 AACATCCAGAAGGAGTCGACGCTTCAT 13483604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||| ||||| |||| || || |||| ||| | || ||||| | Sbjct 8143828 AAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCA 8143769 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | || || |||||| ||||| ||||| || ||||| || Sbjct 8143768 TCCGACACGATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCGGAC 8143709 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| ||||| || ||||| | || | || || || Sbjct 8143708 CAGCAGCGTCTGATCTTCGCCGGGAAGCAGCTGGAAGACGGGAGGACGCTCGCGGACTAC 8143649 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| || ||| | | ||||||||||| Sbjct 8143648 AACATCCAGAAGGAGTCGACGCTTCACTTGGTGCTCCGCCTGAGAGGAGGA 8143598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||| | || || |||||||| ||| Sbjct 5292413 GACAAAGAAGGAATACCGCCGGATCAACAGAGGCTGATATTCGCTGGGAAGCAACTAGAA 5292472 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | | || || ||||| || ||||| || || |||| || || || Sbjct 5292473 GATGGTAGAACCCTTGCGGACTACAACATCCAGAAAGAGTCAACGCTTCACTTGGTCTTG 5292532 Query 24204 AG 24205 || Sbjct 5292533 AG 5292534 >seq3 Length=31725688 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 || |||| ||||| | || || ||||| | || || || | || ||| ||||||||| Sbjct 11140860 AAGCAAAGATGCAGATCTTCGTGAAAACCCTCACGGGGAAGACAATCACCCTCGAAGTCG 11140919 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || || |||||||||||| | ||||| ||||| ||||| |||||||| |||| Sbjct 11140920 AGTCCTCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTC 11140979 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 | || || ||| ||||||| | || ||| ||||| || || || | | | | || || Sbjct 11140980 CGGACCAGCAGCGACTGATCTTCGCCGGGAAGCAGCTGGAGGACGGACGCACCCTCGCCG 11141039 Query 24163 ATTATAACATTCAAAAAGAATCTAC 24187 | || ||||| || || || || || Sbjct 11141040 ACTACAACATCCAGAAGGAGTCCAC 11141064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || ||||| | || ||| |||| || ||| | | Sbjct 13310744 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTCGAGGTGGAGAGCTCC 13310803 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| || || || || || ||||| ||||| Sbjct 13310804 GACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGAATCCCTCCGGATCAG 13310863 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||||||||| | ||||| | |||| | | || || ||| Sbjct 13310864 CAGAGGCTTATCTTCGCCGGCAAGCAGTTGGAAGACGGGAGAACCTTGGCTGACTACAAC 13310923 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || ||||| |||| || || Sbjct 13310924 ATCCAGAAGGAGTCTACGCTTCACTTGGT 13310952 >seq5 Length=23960834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||| | || || ||||| ||||| |||| ||| | || || || | Sbjct 16974848 ATGCATATCTTTTTCAAGACCTTAACGGGAAAGACGATCACCCTTGAGGTGGAAAGCTCT 16974907 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| || ||||| ||||| ||||| Sbjct 16974908 GACACCATCGACAATGTTAAAGCCAAGATTCAAGACAAGGAGGGCATTCCTCCGGATCAG 16974967 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| ||||| || | |||| | | |||||| ||| Sbjct 16974968 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGGAGAACCCTAGCCGATTACAAC 16975027 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 16975028 ATCCAGAAGGAGTCGAC 16975044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| ||||| |||| || |||| || ||| | | Sbjct 16975076 ATGCAGATCTTTGTCAAGACCTTAACGGGAAAGACGATCACACTCGAGGTGGAGAGCTCC 16975135 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || ||||| || Sbjct 16975136 GACACCATCGATAACGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCGCCCGACCAG 16975195 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | ||||||||| | || |||| | | | ||| || ||| Sbjct 16975196 CAGCGTTTGATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACATTGGCCGACTACAAC 16975255 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || ||||| | |||||| | || | ||||| Sbjct 16975256 ATTCAGAAGGAGTCGACTCTTCATCTCGTGTTACGTCTGCGTGGAGG 16975302 >seq6 Length=26286742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | || ||| | || || || | Sbjct 15796272 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 15796331 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 15796332 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 15796391 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| | ||||| | ||| | | | ||||| || Sbjct 15796392 CAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTACAAT 15796451 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || || ||||| |||| Sbjct 15796452 ATCCAGAAGGAGTCTACGCTTCA 15796474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429725101478595