Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq8 118 1e-21 >seq6 Length=26286742 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||||| | ||| ||||| || ||||| |||||| | ||| | || || Sbjct 24944257 AGTTCCAGAGTTAAAGAGGGTCGGAGACGCATGAGTGAACCATCGCTGAGACATTAAATG 24944316 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| |||| | |||||| || |||||| || |||||| || || | || | ||| | Sbjct 24944317 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 24944376 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | || | | |||||| | ||| ||| | || | Sbjct 24944377 CATGTGCTGAGGCCTTTCAACAACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 24944436 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||| || || ||||| |||| ||| |||||| || |||||||| || Sbjct 24944437 AGTCTTGAATCCAAAGTAGTCATATTCAAAGTCACGGTCGTAAATGAT 24944484 >seq8 Length=21613650 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| || || | ||| | ||| || | ||| |||| | || |||||||| |||||| Sbjct 16023299 TCCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACC 16023358 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 16023359 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 16023418 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| || ||||| || |||| || | ||| || ||| ||||||||||| || Sbjct 16023419 AACACCGATACCCCCAGCTGATTTACTTATAACTGCACACTCTTTCAACGTATCATATAT 16023478 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||| ||||| Sbjct 16023479 TCCCTCGATGCTATCATCCTTCATG 16023503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| | ||| || | || ||||| || |||||||||||| | | ||| | || || Sbjct 16023626 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 16023685 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || | || || || || || || || ||||| || || | || | ||| | Sbjct 16023686 GTAAGTTTTGATTGCGGAATCAATGTCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 16023745 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||||||||| || |||||||||| || | | ||| || | ||| || | || | Sbjct 16023746 CATGTGCTGCGGCCTTTCAACGACTTTCCCATGGACTTTTAAGAGGTATGACCTCTCAAG 16023805 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 16023806 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCACGATCATAAATGAT 16023853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633313211820400