Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq1 98.7 7e-16 seq26880 84.2 2e-11 seq6 84.2 2e-11 >seq10 Length=17599535 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || || || ||||| || || ||| ||||| || | | Sbjct 17168592 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 17168651 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | | | ||| || ||| || || || || | ||| |||| Sbjct 17168652 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 17168711 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| | ||| |||| |||||||| Sbjct 17168712 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 17168771 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || |||||||| | || || ||| | || || ||| Sbjct 17168772 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGA 17168820 >seq1 Length=28635137 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||| ||||| |||||||| ||||| || ||| | ||| Sbjct 22221553 GACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAA 22221494 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | || |||| |||||||| ||||||||||| ||||| ||||| |||| || Sbjct 22221493 GATGGCAGGACCTTGGCTGATTACAACATTCAGAAGGAGTCTACGCTTCACTTGGTCTTG 22221434 Query 22047 CGTTTACGAGGAGG 22060 ||| |||| ||||| Sbjct 22221433 CGTCTACGTGGAGG 22221420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | || | |||| ||||| | ||||||||||| || || || || Sbjct 22221781 GACAAAGAGGGTATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAG 22221722 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || |||| |||||||| || |||||||| ||||| ||||| |||| || Sbjct 22221721 GATGGTCGCACCTTGGCAGATTACAACATCCAGAAGGAGTCTACGCTTCACTTGGTCTTG 22221662 Query 22047 CGTTTACGAGGAGG 22060 ||| |||| ||||| Sbjct 22221661 CGTCTACGTGGAGG 22221648 >seq26880 Length=258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||| ||||| |||||||| ||||| || ||| | ||| Sbjct 27 GACAAGGAGGGTATTCCTCCCGACCAGCAGAGGCTTATCTTCGCTGGGAAGCAATTGGAA 86 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| | || |||| |||||||| ||||||||||| ||||| ||||| |||| Sbjct 87 GATGGCAGGACCTTGGCTGATTACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 142 >seq6 Length=26286742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| | |||| ||||| || ||||| ||||||||||| || || Sbjct 15796593 GACAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTGATCTTCGCTGGCAAACAGCTTGAG 15796652 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| ||| |||| || ||||| || |||||||| |||||||| || |||| Sbjct 15796653 GATGGTCGTACTTTGGCGGACTACAACATCCAGAAGGAGTCTACTCTCCACTTGGT 15796708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || ||||| || || ||||| |||| ||| | | Sbjct 15796956 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 15797015 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| || ||| ||||| ||||| | || |||| Sbjct 15797016 GACACTATTGATAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAG 15797075 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| ||||| || || || ||| || ||| | || || ||||| Sbjct 15797076 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGAAGGACTCTTGCTGACTACAAC 15797135 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||| |||||||||||| Sbjct 15797136 ATCCAGAAGGAGTCTACTCTTCAT 15797159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357949127363146