Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 >seq3 Length=31725688 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || |||||||||||| || || || | | Sbjct 29591321 ACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAGA 29591380 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| ||| | || | |||||||| ||||| || ||||| |||| || || ||||| Sbjct 29591381 CCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAAC 29591440 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 29591441 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 29591500 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| || || || | || | || || || | Sbjct 29591501 GACATTATTATCCGGCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-ATCTA--A 29591556 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| || || ||||||| Sbjct 29591557 GAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 29591591 Score = 96.9 bits (106), Expect = 3e-15 Identities = 184/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| ||||| |||| | || || ||| ||||||||||| || || || | Sbjct 20592753 ACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGG 20592812 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 | ||| || | || | |||||||| ||| || || ||||| || || || ||||| || Sbjct 20592813 CTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAAC 20592872 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || || |||||||||| | | ||| | |||||||| ||| Sbjct 20592873 TGCGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCA 20592932 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | ||||| | | ||| | ||||| || || || || | | || | | Sbjct 20592933 GATAATATGATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTCTGCGAGC 20592992 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || |||| || || ||||||| Sbjct 20592993 TGATCAAAGCCTTGGCTAGTGTAATCAGCAT 20593023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441150739827160