Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9 109 4e-19 seq7 107 2e-18 seq5 100 2e-16 seq3787 91.5 1e-13 seq3 91.5 1e-13 >seq9 Length=37155481 Score = 109 bits (120), Expect = 4e-19 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || ||||| ||||| || ||||||||| ||||||||||| | | Sbjct 24150852 CCTCCCCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG-C 24150910 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 24150911 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 24150970 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| ||| || ||| || | || | | || | ||||| Sbjct 24150971 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTC 24151027 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 24151028 GACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 24151081 >seq7 Length=22597724 Score = 107 bits (118), Expect = 2e-18 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| |||||||| ||||||||| |||||||| || || Sbjct 8143599 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 8143658 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| |||| ||||| ||||| || ||||| |||||||| ||| || Sbjct 8143659 AGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGG 8143718 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| ||| || ||| || | || | | || | |||||| Sbjct 8143719 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTCG 8143775 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||| ||||||||| Sbjct 8143776 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 8143829 >seq5 Length=23960834 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || | ||| |||||||| || |||||||||||||||||| || ||| Sbjct 16975302 CCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCC 16975243 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || ||||| |||||||||||||| |||| |||||||| || ||| Sbjct 16975242 AATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG 16975183 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 16975182 ATTCCCTCCTTGTCC 16975168 >seq3787 Length=174 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || ||||| ||||| || ||||||||| ||||||||||| | | Sbjct 27 CCTCCCCTCAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG-C 85 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 86 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 145 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | | || |||||| ||| || Sbjct 146 GATACCTTCCTTGTCCTGAATCTT 169 >seq3 Length=31725688 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||| |||||||| ||||||||| |||||||| || ||||| || | Sbjct 13310961 AGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 13310902 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||||||||| || || || | |||||||||| || | | ||| Sbjct 13310901 CCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCC 13310842 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || ||| ||| || ||||| | | | || | || | || |||| || Sbjct 13310841 TTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTC-GGAGCTCTCCACCTCGAGGGT 13310783 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || |||||||| ||||| ||||| Sbjct 13310782 GATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 13310744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396867627119698