Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 149 1e-30 seq3 149 1e-30 seq8 140 8e-28 seq6 140 8e-28 seq1 134 3e-26 seq9 131 4e-25 seq4 125 2e-23 seq5 100 7e-16 seq7076 86.0 1e-11 >seq7 Length=22597724 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||||| ||| || || ||||| || ||||||||| Sbjct 13483627 CCACCACGGAGACGGAGGACGAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 13483568 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||||| || |||||||| || ||||| || ||| Sbjct 13483567 AGGGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGTCGCTGCTGGTCCGGAGGG 13483508 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||| || || || Sbjct 13483507 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 13483448 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 13483447 TCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCAT 13483401 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| |||||||| | |||||||| | || || || |||||| Sbjct 8143635 TCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAG 8143694 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| ||||| || ||||| || || || ||||| || Sbjct 8143695 ATCAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTG 8143754 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || || || ||||||||||| || || || || || Sbjct 8143755 TCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACA 8143814 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 8143815 AAGATCTGCATT 8143826 >seq3 Length=31725688 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 11141094 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 11141035 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || | || || || ||||||||||| ||||| || ||| Sbjct 11141034 AGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGGTCCGGAGGG 11140975 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || || || || || | ||| || || ||| Sbjct 11140974 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACT 11140915 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| || || || || ||||| |||||||| Sbjct 11140914 TCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCAT 11140868 Score = 138 bits (152), Expect = 3e-27 Identities = 172/233 (74%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || || || |||| || |||||| ||||| |||||||| || Sbjct 13311426 CCACCACGGAGCCTGAGCACCAGGTGAAGAGTTGATTCTTTCTGGATGTTATAGTCAGCC 13311367 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | ||||| || ||||||||||| | ||| || ||||| Sbjct 13311366 AAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGG---TCTGGA 13311310 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 || || ||||| ||||||||||| ||||||||||| || || | ||| ||| Sbjct 13311309 GGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTC--- 13311253 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| || || | |||||| ||||| |||||||| Sbjct 13311252 TCCACCTCTAGCGTGATCGTCTTTCCTGTTAAAGTCTTCACGAAGATCTGCAT 13311200 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || || || || | ||||| || ||||| || || ||||| || ||| Sbjct 13311162 TCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAG 13311103 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||| || ||||||||||| || || || || || Sbjct 13311102 ATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTG 13311043 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || |||| || || || | ||||| ||||| ||||||| |||||| Sbjct 13311042 TCAATAGTGTCAGAGCTC---TCAACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTG 13310986 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 13310985 ACAAAGATCTGCAT 13310972 >seq8 Length=21613650 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| ||||| || | |||||||| | || ||||| |||||| Sbjct 12584982 TCCTTCTGGATGTTGTAGTCAGCGAGAGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAAG 12584923 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | ||| ||| || ||| || ||||| ||||||||||| || ||||| ||| Sbjct 12584922 ATCAACCTCTGCTGA---TCCGGGGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACG 12584866 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||| || ||||| ||||||||||||||||| |||||||| Sbjct 12584865 TTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGAGTCTTA 12584806 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 12584805 ACGAAGATCTGCAT 12584792 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || || | |||||||| | || || || |||||| Sbjct 12585210 TCCTTCTGGATGTTGTAGTCAGCCAGAGTTCTACCGTCTTCAAGCTGCTTGCCGGCGAAG 12585151 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||| ||||| || || ||||| || ||||||||||| Sbjct 12585150 ATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTG 12585091 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || || ||||||||||| ||||||| |||||| Sbjct 12585090 TCGATTGTGTCGGAACTC---TCGACCTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTG 12585034 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 12585033 ACGAAGATCTGCAT 12585020 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | | || | |||| || || ||||| || || |||||||| Sbjct 12585474 CCACCGCGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCA 12585415 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || ||||| |||||||| |||||||| || ||| Sbjct 12585414 AGGGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTG---GTCTGGA 12585358 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| |||| || || ||||| || || || ||||| || || | || |||| Sbjct 12585357 GGGATGTCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCCGAGCTC--- 12585301 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| ||||| | ||||||| || |||||||| Sbjct 12585300 TCCACCTCCAGTGTGATGGTCTTTCCGGTTAAGTTCTTGACAAAGATCTGCAT 12585248 >seq6 Length=26286742 Score = 140 bits (154), Expect = 8e-28 Identities = 176/238 (74%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || |||||||||| || || || ||||| || |||| Sbjct 15796958 CATG-CCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGT 15796900 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || | || || || || || | ||||| || |||||||| |||||||| || | Sbjct 15796899 CCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGG---T 15796843 Query 288362 CTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---C 288415 |||| ||| ||||| || || ||||| || || |||||||| || |||| ||| | Sbjct 15796842 CTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGC 15796783 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || |||||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 15796782 TC---TCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 15796728 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| |||| || || ||||| || |||||||| Sbjct 15797866 CCACCACGGAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCT 15797807 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || ||||| |||||||| |||||||| || ||| Sbjct 15797806 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 15797747 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || ||||| || || ||||| || || |||||||| || |||| ||| ||| || Sbjct 15797746 ATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTC---TCC 15797690 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 15797689 ACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 15797640 Score = 114 bits (126), Expect = 3e-20 Identities = 145/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | || || || || || | ||||| || |||||| Sbjct 15796690 TCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAG 15796631 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || ||||| || || ||||| ||||||||||| ||||||||| Sbjct 15796630 ATCAGCCTCTGCTGG---TCTGGAGGAATACCCTCTTTGTCCTGGATTTTGGCTTTCACG 15796574 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| ||| || || || |||||||||||||| || || | |||| Sbjct 15796573 TTGTCAATGGTGTCGGAACTC---TCCACCTCTAGCGTGATCGTCTTTCCTGTTAAAGTC 15796517 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 15796516 TTCACGAAGATCTGCAT 15796500 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || |||||||||| || || || ||||| || |||| Sbjct 15797186 CATG-CCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGT 15797128 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || | ||| || || | || || || || ||||| || | ||| || Sbjct 15797127 CAGCAAGAGTCCTTCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCG 15797068 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 ||||||||| || |||||||| || || || || || || || |||| || |||| Sbjct 15797067 GTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTC- 15797009 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || ||||||||||| |||| ||||||||| || || ||||| Sbjct 15797008 --TCCACCTCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15796956 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/197 (72%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || | || || || || || | ||||| || |||||| Sbjct 15797602 TCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAG 15797543 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||||| ||| ||||| || || ||||| || || ||||| Sbjct 15797542 ATGAGACGCTGCTGG---TCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACT 15797486 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || |||| || ||| || || || | ||||| ||||| ||||| || ||| Sbjct 15797485 TTATCAATAGTGTCCGAACTC---TCAACCTCCAATGTGATGGTCTTGCCGGTAAGGGTC 15797429 Query 288457 TTGACGAATATCTGCAT 288473 || || ||||||||||| Sbjct 15797428 TTCACAAATATCTGCAT 15797412 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| || || || | ||| || || || || || || || || Sbjct 15797374 TCTTTCTGAATGTTGTAGTCAGCTAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAT 15797315 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||| || |||||||| || || || || || || Sbjct 15797314 ATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTA 15797255 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || |||| || || || | || ||||||||||| |||| ||||||| Sbjct 15797254 TCAATAGTGTCAGAGCTC---TCCACCTCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTG 15797198 Query 288460 ACGAATATCTGCAT 288473 || || || ||||| Sbjct 15797197 ACAAAAATTTGCAT 15797184 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/168 (73%), Gaps = 5/168 (3%) Strand=Plus/Plus Query 268486 TGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTTAAC 268545 ||| | |||||||||||||| | ||| | || |||||| |||| ||||| ||| | Sbjct 22599111 TGGGAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAAGTCGATCTCT-C 22599169 Query 268546 GCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATCAAACA 268604 ||| ||| | |||||| ||||| || ||| ||| || || |||||||||||||| Sbjct 22599170 GCAAGACACTCGCGACTGG---GAGAATCTCAACGACGGAGAGCGCCACTTCATCAAACA 22599226 Query 268605 TATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCT 268652 | || | ||||| || | ||||||||| ||||| | || ||||| Sbjct 22599227 CGTCCTCGCCTTCTTCGCCGCCTCCGACGGAATCGTTTTAGAGAATCT 22599274 >seq1 Length=28635137 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||||| || || || ||||| || |||||||| Sbjct 22221876 CCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 22221935 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || || || || || || ||||| || | ||| || |||| Sbjct 22221936 AGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 22221995 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || ||||||||||| || || || ||||| || || | |||| ||| || Sbjct 22221996 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACC 22222055 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| ||||||||||| || || || |||||||| Sbjct 22222056 TCCAAAGTGATCGTCTTTCCGGTCAGAGTTTTAACAAAGATCTGCAT 22222102 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || | || | || ||||| ||||| || || |||||| Sbjct 22221456 TCCTTCTGAATGTTGTAATCAGCCAAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAG 22221515 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || || || || || || ||||||||||| ||||||||||| Sbjct 22221516 ATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATTTTGGCTTTCACGTTG 22221575 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || |||||||||||||| || |||| ||||||| Sbjct 22221576 TCAATGGTGTCGGAACTC---TCCACCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTG 22221632 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 22221633 ACGAAGATTTGCAT 22221646 >seq9 Length=37155481 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| || || || || || ||||| | |||||||| ||||||| Sbjct 26352610 CTTTCTGGATGTTGTAGTCAGCCAGAGTACGGCCATCTTCGAGCTGTTTTCCAGCGAAGA 26352551 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| ||| ||||| |||||||| || ||||| || || || || || | Sbjct 26352550 TCAATCGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGT 26352491 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| || || || ||||| ||||| |||||||||||||| || || |||| Sbjct 26352490 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACGA 26352431 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 26352430 AGATCTGCAT 26352421 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| || || |||||||| | || || ||||| || || ||||| ||| Sbjct 16960929 CCGCCACGGAGCCTGAGGACGAGATGCAAAGTTGACTCCTTTTGAATGTTGTAGTCAGCG 16960988 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || || || ||||||| | || ||| | || Sbjct 16960989 AGGGTACGCCCATCTTCAAGCTGCTTACCGGCAAAGATCAATCTTTGCTGATCCTGAGGA 16961048 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || |||||||||||||| || || ||||| ||||| || || | ||| |||| || Sbjct 16961049 ATACCTTCTTTATCCTGAATCTTGGCTTTAACGTTGTCGATGGTATCAGAGCTC---TCC 16961105 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 16961106 ACCTCCAAAGTGATCGTCTTCCCTGTCAGTGTCTTAACGAAGATCTGCAT 16961155 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||||| ||| || || ||| | || |||||||||||||||||||||||| Sbjct 30362456 AGGACGAGATGAAGCGTCGACTCCTTCTGGGTGTTGTAGTCGGCGAGCGTGCGTCCGTCT 30362397 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 30362396 TCCAGCTGCTTCCCGGCGAAAATCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCC 30362337 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || || || || || | ||| || || || ||||| ||||| || Sbjct 30362336 TGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTT 30362277 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || |||||||| Sbjct 30362276 TTTCCCGTAAGGGTTTTCACAAAGATCTGCAT 30362245 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || ||||| ||||| || ||||| || Sbjct 16960245 CCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCT 16960304 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || || ||||||| |||||| || || Sbjct 16960305 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 16960364 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || |||||||| || |||||||| ||||||||||| || || | ||| ||| || Sbjct 16960365 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTC---TCC 16960421 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||||||||| |||||||| || |||||||| Sbjct 16960422 ACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960471 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || ||||| || | ||||||||| | || || || |||||| Sbjct 24150888 TCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAG 24150947 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| ||||| || ||||| || || || ||||| || Sbjct 24150948 ATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTG 24151007 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || | || ||||||||||| || || || || || Sbjct 24151008 TCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACA 24151067 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 24151068 AAGATCTGCATT 24151079 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| || | || || || || || | || || || || ||| Sbjct 16960509 TCCTTCTGAATGTTATAGTCAGCCAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAG 16960568 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || || || |||||||| || |||||||| ||||||||||| Sbjct 16960569 ATCAAACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTG 16960628 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || || || || || |||||||||||||| |||||| Sbjct 16960629 TCAATGGTGTCGGAACTC---TCCACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTG 16960685 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 16960686 ACAAAGATCTGCAT 16960699 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || ||||| || | ||||| || | || || || || ||| Sbjct 16984508 TCCTTCTGGATATTGTAATCAGCGAGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAG 16984567 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || || || || || || || ||||| || ||||| ||||| Sbjct 16984568 ATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCTTGGATCTTAGCTTTAACGTTG 16984627 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | ||| ||| || || ||||||||||||||||| ||||| |||||||| Sbjct 16984628 TCGATGGTGTCGGAGCTC---TCCACCTCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTA 16984684 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 16984685 ACAAAGATCTGCAT 16984698 >seq4 Length=18984343 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| |||| ||| || || ||||| || ||||||||| Sbjct 357466 CCACCGCGGAGGCGGAGGACGAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 357525 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||| || | || || || ||||||||||| ||||| || ||| Sbjct 357526 AGGGTCCTCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGG 357585 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || ||||| || || | ||| || || || Sbjct 357586 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCGACC 357645 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || || || ||||| |||||||| Sbjct 357646 TCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 357692 >seq5 Length=23960834 Score = 100 bits (110), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 |||||||||| || || || || || || |||||||| | || || || || || Sbjct 16975284 ACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCCAATGTACGACCATCCTCC 16975225 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || || || || ||||||| |||||| || |||||||| || || ||||| Sbjct 16975224 AACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGGATTCCCTCCTTGTCCTGT 16975165 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || || ||||| || || | ||| ||| || || ||||| ||||||||| Sbjct 16975164 ATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCCACCTCGAGTGTGATCGTC 16975108 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | |||||||| || |||||||| Sbjct 16975107 TTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 16975076 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || || |||||||| | || || || ||| | || || ||||| Sbjct 16974846 CCACCACGGAGCCTGAGGACGAGATGTAGAGTCGACTCCTTCTGGGTGTTGTAATCGGCT 16974787 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || ||||| |||| ||| || | ||| ||| || Sbjct 16974786 AGGGTTCTCCCCTCCTCGAGCTGCTTTCCGGCGAGGATGAGCCTCTGCTGATCCGGAGGA 16974727 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || || || || ||||| || || || || | || ||| ||| Sbjct 16974726 ATACCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCT---TTCC 16974670 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || || ||||| ||||| |||||||| Sbjct 16974669 ACCTCAAGGGTGATCGTCTTTCCCGTGAGTGTCTTAACGAAGATCTGCAT 16974620 Score = 87.8 bits (96), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| || || |||||||| | || || || ||||| || || | Sbjct 16975078 CATG-CCACCACGGAGCCTGAGGACGAGATGTAGAGTCGACTCCTTCTGGATGTTGTAAT 16975020 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || | ||||| || | || ||||| |||||||| || | ||| ||| Sbjct 16975019 CGGCTAGGGTTCTCCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCG 16974960 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCG 288418 || || || || || || || || || ||||| || || || || | || ||| Sbjct 16974959 GAGGAATGCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCGATGGTGTCAGAGCT-- 16974902 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || || ||||||||||| || || | ||||||| || || ||||| Sbjct 16974901 -TTCCACCTCAAGGGTGATCGTCTTTCCCGTTAAGGTCTTGAAAAAGATATGCAT 16974848 >seq7076 Length=126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/112 (78%), Gaps = 6/112 (5%) Strand=Plus/Plus Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 ||||||| || ||||||||||| || || || ||||| || |||| || |||| | Sbjct 1 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATAGTGTCAGAGCTC---T 57 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || | ||||| ||||| ||||||| |||||||||||| |||||||| Sbjct 58 CCACCTCCAAAGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179046063653822