Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-27 seq2 114 3e-20 >seq6 Length=26286742 Score = 138 bits (152), Expect = 2e-27 Identities = 573/886 (65%), Gaps = 35/886 (4%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || ||| | || ||||| ||||| |||||||| | ||| Sbjct 22599079 TCTGCATGTTCCCGATCCACTAACCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCT 22599138 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCA-GACG-TCGTCGACTGGCGCGAGAA 242984 | || |||||| |||| ||||| ||| |||| ||| ||| ||||||| ||||| Sbjct 22599139 CTTTCTGGACCGCCGAAGAAGTCGATCTCT-CGCAAGACACTCG-CGACTGG---GAGAA 22599193 Query 242985 ACTCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGA 243044 ||||| |||| || || || |||||||||||| | || | || ||||| | |||||| Sbjct 22599194 TCTCAACGACGGAGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGA 22599253 Query 243045 TGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGG 243103 || || || | || ||||| || || | ||| || || || | |||| Sbjct 22599254 CGGAATCGTTTTAGAGAATCTCGCCTCCCGGTTCA-TGTCCGACGTGCAAGTCTCCGAGG 22599312 Query 243104 CACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATAT 243159 | || || || | | ||| | ||| | ||| |||||| || || || Sbjct 22599313 CGCGTGCCTTCTACGGGTTCCAGATCGCGATTGA--GAA--TATCCACTCAGAGATGTAC 22599368 Query 243160 GCTCTTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACG 243217 || || ||||| || || ||| || | ||||| | || | || ||| || Sbjct 22599369 AGCCTCCTGCTCGACACG--TACATCAAGGACAACAAAGAGAGGGACCACCTCTTCCGCG 22599426 Query 243218 CCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAAC 243277 | || |||| ||| || || || ||||| ||||||| ||||||| | || Sbjct 22599427 CGATTGAAACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCATGAAGTGGATCGA-- 22599484 Query 243278 CCGG---TAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGT 243334 ||| | | | || || ||| | |||| || | | ||||| ||||| || | | Sbjct 22599485 -CGGATCTCAGACTTTCGCCGAGAGGATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCT 22599543 Query 243335 TTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCG 243394 | ||||| || |||||| ||||||| |||||| ||| ||| | ||||| || | Sbjct 22599544 TCTCCGGAAGCTTCTGCTCCATCTTCTGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAA 22599603 Query 243395 GTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA 243454 | || |||||||| ||| ||| ||||| ||||||||| | |||| || | Sbjct 22599604 CCTTCTCCAACGAGTTGATCTCTCGAGACGAAGGCCTTCACTGCGACTTCGCCTGCCTGA 22599663 Query 243455 TGTAT--TCAAAGCTCCAGAAC-AAGCTACCATTCGAAACGGTCAAACAAATCATCACAG 243511 | ||| || | | || || ||||| | || || || || || | Sbjct 22599664 TCTATACTCTA---TTGAGGACGAAGCTCACGGAGGAGCGCGTGAAGTCGATTGTCTGCG 22599720 Query 243512 AAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCA 243571 | || || || | ||| | ||| || | |||||||| |||| ||| | | | || | Sbjct 22599721 ACGCGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTGGGGA 22599780 Query 243572 TGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGC 243631 ||||| ||| | ||| | ||||| || || || || || || | |||| ||||| Sbjct 22599781 TGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGCGCGC 22599840 Query 243632 TTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGC 243691 |||| || | ||| |||||| ||| || |||| | |||||| | ||||||| Sbjct 22599841 TTGGGTAGGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATTTCGC 22599900 Query 243692 TTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||| |||||||| |||||||| || ||| | || | ||||| || Sbjct 22599901 TTCAGGGGAAAACGAACTTCTTTGAGAAGAGAGTTGGGGATTACCA 22599946 >seq2 Length=27864329 Score = 114 bits (126), Expect = 3e-20 Identities = 565/883 (64%), Gaps = 26/883 (3%) Strand=Plus/Plus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || || | || ||||| ||||| ||||| || | || Sbjct 22153002 TCTGCATGTTCCCGATCCACTACCCTCAGATCTGGGAGATGTACAAGAAAGCCGAAGCCT 22153061 Query 242927 CCTTTTGGACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA 242984 |||| |||||| |||||||||| ||||| | |||| | ||||||| | || | Sbjct 22153062 CCTTCTGGACCGCCGAGGAAGTCGACCTCTC--CCAAGACACCCGCGACTGG-GAGACCA 22153118 Query 242985 AC-TCAATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCG 243043 || |||| |||| ||| || || |||||||||||| | || | || ||||| | ||||| Sbjct 22153119 ACCTCAACGACGGCGAGCGCCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCG 22153178 Query 243044 ATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAG 243102 | || || || | || ||||| || || | ||| || || ||| | ||| Sbjct 22153179 ACGGAATCGTCCTCGAGAATCTCGCCTCCCGGTTCA-TGTCCGACGTGCAGGTCTCCGAG 22153237 Query 243103 GCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTC--TGAACAA 243156 || || || || | | ||| | ||| | ||| |||||| || || | Sbjct 22153238 GCGCGTGCCTTCTACGGGTTCCAGATCGCGATTGA--GAA--TATCCACTCGGAGATGTA 22153293 Query 243157 TATGCTCTTCTTATCGACGCGCTTATTTCAGATGAACAA-GAGCGAAACGAGCTTTTCGA 243215 | ||||| || || || | || ||||| ||| | || | || ||| Sbjct 22153294 CAGCCTCTTGCTAGATAC---CTACATCAAGGACAACAAGGAGAGGGACCATCTCTTCCG 22153350 Query 243216 CGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGA 243275 ||| || || | ||| || || || ||||| ||||||| ||||||| | || Sbjct 22153351 CGCGATTGAGACCATCCCTTGCGTCGCGAAGAAGGCCCAATGGGCCTTGAAGTGGATCGA 22153410 Query 243276 ACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 | | | || || ||| | |||| |||| | |||||| ||||| || | || Sbjct 22153411 TGGATCTCAGACTTTCGCAGAGAGGATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTT 22153470 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395 ||||| || |||||| ||||||| ||||| ||| ||| | ||||| || ||| Sbjct 22153471 CTCCGGAAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCAC 22153530 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTA 243454 | || |||||| | ||| || ||||| ||||||||| | |||| ||| || | Sbjct 22153531 CTTCTCCAACGAGCTGATCTCGCGGGACGAAGGCCTTCACTGCGACTTCGCGTG-CCTGA 22153589 Query 243455 TGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAG 243514 | ||| | | | || |||||| | || || || ||| | || | Sbjct 22153590 TCTATACCTTGTTGAGGACGAAGCTATCGGAGGAGCGCGTGAAGTCGATCGTGTGCGACG 22153649 Query 243515 CAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGA 243574 | || || | ||| | ||| || | |||||||| |||| ||| | | | || |||| Sbjct 22153650 CGGTGGAGATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGA 22153709 Query 243575 ACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTG 243634 || || | ||| | ||||| || || || || || || | |||| ||||||| Sbjct 22153710 ACCGGGACTTGATGAGTCAGTATATTGAGTTTGTGGCGGATAGGCTTTTGGGTGCGCTTG 22153769 Query 243635 GTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTC 243694 | || | ||| |||||| ||| || |||| | |||||| | || ||||||| Sbjct 22153770 GGTACGGGAAGGTGTACGGTGTGGCGAATCCGTTTGATTGGATGGAGTTGATCTCGCTTC 22153829 Query 243695 AAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | || ||||| || |||||||| ||| | || ||||||| || Sbjct 22153830 AGGGTAAAACGAATTTCTTCGAGAAGAGGGTTGGTGATTACCA 22153872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102311255468150