Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq6 107 2e-18 seq10 89.7 6e-13 seq3 86.0 7e-12 >seq2 Length=27864329 Score = 113 bits (124), Expect = 5e-20 Identities = 189/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22153570 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22153511 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || ||||||||||| || ||||| || Sbjct 22153510 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22153451 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||| || | || | ||| || || | | || | || | |||||||| || Sbjct 22153450 CGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAGGC 22153394 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22153393 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22153334 Query 126298 TTC--TGATGGATCTTTGATGTACTTATCTA 126326 || || || || |||||||| |||||| Sbjct 22153333 CTCCTTGTTG--TCCTTGATGTAGGTATCTA 22153305 >seq6 Length=26286742 Score = 107 bits (118), Expect = 2e-18 Identities = 185/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || || ||||| || ||||| | || || |||||| | || |||||||| || Sbjct 22599644 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 22599585 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| || | || || || ||||||||||| || ||||| || Sbjct 22599584 TCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22599525 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | || | ||| || || | | || | ||| | ||||||||| || Sbjct 22599524 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 22599468 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTT 126294 ||| || ||||| ||| ||| || |||| ||| | ||||| |||| | ||| | Sbjct 22599467 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCT 22599408 Query 126295 CTTTTCTGATGGATCTTTGATGTAC 126319 || || || || || ||||||||| Sbjct 22599407 CTCTT-TGTTG--TCCTTGATGTAC 22599386 >seq10 Length=17599535 Score = 89.7 bits (98), Expect = 6e-13 Identities = 324/499 (65%), Gaps = 20/499 (4%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || ||||| | | | |||| |||||| |||||| | ||| || || Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 10847 GCGATGACAACGATG---CCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGT 10900 || | ||||||| || || |||| ||||| ||||||||||| ||||| || Sbjct 1381246 GCAA---CAACGATAACACCAGT---GTTACCTTCAAAACCATCCATCTCCGTCAAAAGC 1381193 Query 10901 TGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGC 10957 ||||| | || ||||| | ||||||||| | | | |||||| | | | |||| Sbjct 1381192 TGATTAAGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCA---GTTCCTCTTTGC 1381136 Query 10958 TTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACT 11017 |||| || || || || ||||| | || || ||||| || || || ||| | Sbjct 1381135 CTACCCACAGCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTT 1381076 Query 11018 TCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCG 11077 | || | ||| ||||| ||| ||||| ||||| |||||||| || ||||| | | Sbjct 1381075 TTGAAAAGATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAA 1381016 Query 11078 GCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 11136 | | | || | | ||| || ||| | |||||| || ||||| || | ||| || Sbjct 1381015 CCCG-AGATGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGT 1380957 Query 11137 CTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCC 11196 ||||| || || || || |||| || |||| ||||||| ||||| | Sbjct 1380956 TTTCCCAGTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGC 1380897 Query 11197 AAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGC 11256 | | | | |||||| | || || || ||||| | ||| || || | ||| || | Sbjct 1380896 AGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAGTCTTGCTTGGCTTC 1380837 Query 11257 GTCGATGCCTTCAACGTCA 11275 |||| || |||||||| Sbjct 1380836 ATCGACTCCAGCAACGTCA 1380818 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || ||||| || ||||| | || || |||||| || || ||||| || || || ||| Sbjct 18728291 CCATCGTCTCGAGAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATAAGCCCTCGTTTC 18728232 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || ||| ||||||||||| || | | || ||||| Sbjct 18728231 TTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTATGCGCAGGCGAAG 18728172 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | | | ||| || |||| | || | ||| | |||||||||||||||||| Sbjct 18728171 GCGATGCTCCTCTCCGCGAAGGTCTGAGA---TCCGTCGATCCACTTCATCGCCCACTGA 18728115 Query 126245 GCCTT-TTTCTCGATACACGGGACG 126268 || || |||| ||| || || ||| Sbjct 18728114 GCTTTCTTTCGCGAAGCAAGGAACG 18728090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597053063936920