Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq1 118 1e-21 seq7 113 5e-20 seq6 113 5e-20 seq10 109 6e-19 seq8 107 2e-18 seq5 107 2e-18 seq4 107 2e-18 seq3 100 3e-16 seq28121 82.4 8e-11 seq26880 82.4 8e-11 seq23325 82.4 8e-11 seq11563 82.4 8e-11 >seq9 Length=37155481 Score = 123 bits (136), Expect = 3e-23 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||| ||||| || | || |||||| || |||||||||||||| Sbjct 16984471 ACCTCCACGCAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGC 16984530 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || |||||||||||||| || || | ||||||||||||| || Sbjct 16984531 GAGGGTTCTGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGG 16984590 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | | |||||||| | || | || | || | ||| | | | ||||| |||| | Sbjct 16984591 AATACCCTCCTTGT-CTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTC---T 16984646 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||| |||||| || || || || || ||||| |||||||| ||||| Sbjct 16984647 CCACCTCGAGCGTGATCGTCTTTCCGGTGAGAGTCTTAACAAAGATCTGCAT 16984698 Score = 113 bits (124), Expect = 5e-20 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| ||||| ||||| || || || || || | Sbjct 16984027 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACC 16984086 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 16984087 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATCCCTTCCTT 16984146 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| |||||| |||| | | | ||||| |||| ||||| || | || Sbjct 16984147 GTCTTGGATTTTGGCCTTGACGTTATCAATGGTGTCCGAGCTC---TCCACCTCAAGTGT 16984203 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || || ||||| |||||||| ||||| Sbjct 16984204 GATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 16984242 Score = 109 bits (120), Expect = 6e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || | ||||| || || || || || |||| || |||||||| || ||||| Sbjct 30362436 CTCCTTCTGGGTGTTGTAGTCGGCGAGCGTGCGTCCGTCTTCCAGCTGCTTCCCGGCGAA 30362377 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||||| || | || ||||||||| ||| || |||| | Sbjct 30362376 AATCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 30362317 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| ||||| ||||| ||||| || || || || Sbjct 30362316 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTTCCCGTAAGGGTTTTCAC 30362257 Query 42197 AAAGATTTGCATTTT 42211 |||||| ||||| || Sbjct 30362256 AAAGATCTGCATCTT 30362242 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || |||| |||| || |||||||| || ||||| Sbjct 24150887 CTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAA 24150946 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | | ||||||||| ||| | || | || | Sbjct 24150947 GATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCC-TGAATCTTGGCCTTCACAT 24151005 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| ||||| || || | || || || || |||||||| || || | Sbjct 24151006 TGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCA 24151065 Query 42196 CAAAGATTTGCATTTTC 42212 ||||||| ||||||||| Sbjct 24151066 CAAAGATCTGCATTTTC 24151082 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || |||||| ||||| || | || |||||| ||||| || || ||||| Sbjct 16960472 ACCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGC 16960531 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || | ||||||||||| | || Sbjct 16960532 CAAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGG 16960591 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | || || ||||| |||||| ||| | ||| | | | |||||| ||| | Sbjct 16960592 AATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---T 16960647 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 16960648 CCACCTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960699 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| ||||||||||| | || |||||| ||||| ||||| ||||||| || || | Sbjct 16984255 ACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGACC 16984314 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || || | | ||||||||| | || | || ||||| Sbjct 16984315 ATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCCTT 16984374 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCG 42168 |||| || | || | | | ||| | | | |||||| ||| ||||| || | | Sbjct 16984375 GTCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTC---TCCACCTCTAGAG 16984430 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || || || ||||| |||||||| ||||| Sbjct 16984431 TAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCAT 16984470 >seq1 Length=28635137 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||| ||||| || | || |||||| ||||| |||||||||||| Sbjct 22221420 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGCC 22221479 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| | || || | ||||| |||||||| || || | ||||||||||| || Sbjct 22221480 AAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGA 22221539 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 42157 | | |||||||||| |||||| ||| | ||| | | | |||||| ||| || Sbjct 22221540 ATACCCTCCTTGTCCTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTC---TC 22221595 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||| || || || || | ||||| || ||||||||||| Sbjct 22221596 CACCTCTAGCGTGATCGTCTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 22221646 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||| ||||| || | || |||||| || || |||||||| ||| Sbjct 22221648 CCTCCACGTAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAATCTGCC 22221707 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| ||||| || || | | ||||||||| | ||| Sbjct 22221708 AAGGTGCGACCATCCTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGG 22221767 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCAC 42160 | | ||| ||||| ||| || ||||| ||| | || |||||| ||| || Sbjct 22221768 ATACCCTCTTTGTCTTGGATCTTGGCTTTGA-CGTTGTCAATAGTGTCGGAGCTTTCAAC 22221826 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| || || ||||| | ||||| || ||||||||||| Sbjct 22221827 CTCCAAAGTGATAGTCTTTCCCGTCAAAGTCTTAACGAAGATTTGCAT 22221874 >seq7 Length=22597724 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | |||||| || | || |||||| || || ||||| || || Sbjct 8143599 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 8143658 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | |||| || |||||||| || ||||| || || ||||||||||| | || Sbjct 8143659 AGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGG 8143718 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| | || | || | | | | ||||||| ||||| || Sbjct 8143719 ATACCTTCCTTGTCC-TGAATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGAC 8143777 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || |||||||| || || |||||||| |||||||| Sbjct 8143778 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 8143828 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || ||||| || || ||||| Sbjct 13483592 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCGAGCTGTTTCCCGGCGAA 13483533 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||||||||| | || | || ||||||||| ||| || |||| ||| Sbjct 13483532 GATGAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 13483474 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| || ||||| || || || | Sbjct 13483473 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTTTTCA 13483414 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 13483413 CGAAGATCTGCATCTT 13483398 >seq6 Length=26286742 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || |||||| |||| || | || |||||| || ||||||||||||||| Sbjct 15796498 CCTCCACGTAGACGCAAGACCAGGTGAAGCGTAGACTCCTTCTGGATATTGTAATCAGCC 15796439 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| |||| || | |||||| || ||||| ||||| | |||||| || | || Sbjct 15796438 AAGGTCCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCAGGAGGA 15796379 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | || ||||||||| ||| | || | || | ||| | | | ||||| ||| ||| Sbjct 15796378 ATGCCTTCCTTGTCC-TGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTC 15796323 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||| || || || || || || |||||||| ||||| Sbjct 15796322 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 15796272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || |||| ||| || | || || ||||| || |||||||| Sbjct 15796919 CTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAA 15796860 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||| ||| || || | ||| Sbjct 15796859 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGT 15796801 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| ||||| || | |||||| || ||||| || | |||| Sbjct 15796800 TGTCAATAGTGTCGGAGCTC---TCCACCTCAAGCGTGATCGTCTTGCCGGTCAATGTCT 15796744 Query 42193 TTACAAAGATTTGCAT 42208 | || || || ||||| Sbjct 15796743 TAACGAAAATCTGCAT 15796728 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || || | || || | || || Sbjct 15797848 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGACCATCCTCG 15797789 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||| | Sbjct 15797788 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGG 15797729 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 || || || | ||| | | | ||||| |||| ||||| || | |||||| || Sbjct 15797728 ATCTTGGCCTTCA-CGTTGTCAATAGTGTCGGAGCTC---TCCACCTCAAGCGTGATCGT 15797673 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || | ||||| || || || ||||| Sbjct 15797672 CTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 15797640 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | ||| ||| || || || ||||| || || | || || | Sbjct 18962226 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCTAAGGTGCGACC 18962167 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 18962166 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 18962107 Query 42113 GTC 42115 ||| Sbjct 18962106 GTC 18962104 >seq10 Length=17599535 Score = 109 bits (120), Expect = 6e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 17168328 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 17168269 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | | ||||||||| ||| || |||| ||| Sbjct 17168268 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGA-CGT 17168210 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| |||||||| ||||| || | |||| Sbjct 17168209 TGTCAATAGTGTCGGAGCTC---TCAACCTCGAGGGTGATGGTCTTGCCAGTCAAAGTCT 17168153 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 17168152 TGACAAAGATCTGCAT 17168137 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 17168100 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 17168041 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | | ||||||||| ||| || |||| | Sbjct 17168040 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 17167981 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || |||| || ||||| ||||| || ||||| || Sbjct 17167980 ATCGATGGTGTCAGAGCTC---TCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTTTT 17167924 Query 42194 TACAAAGATTTGCAT 42208 || || |||||||| Sbjct 17167923 CACGAAAATTTGCAT 17167909 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| || || ||||||||||||| ||||| | Sbjct 17168808 ACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACC 17168749 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||| ||||||||||| ||||||| ||| ||||| | || | | ||||| Sbjct 17168748 ATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTT 17168689 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 |||| ||| | || | | ||| | | | |||||| |||| || || || | | Sbjct 17168688 GTCC-TGAATCTTAGCCTTCACGTTGTCTATCGTGTCTGAGCTC---TCAACTTCCAAGG 17168633 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || ||||| || | ||||| ||||| ||||||||| Sbjct 17168632 TTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCATT 17168592 >seq8 Length=21613650 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||||||||| ||||| || || || || || | Sbjct 12585463 ACGCAACACCAAGTGAAGGGTCGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGACC 12585404 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 12585403 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGTCTTCCTT 12585344 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| || |||| | | | ||||| |||| ||||| || | || Sbjct 12585343 GTCTTGGATCTTGGCCTTGACGTTATCAATGGTGTCCGAGCTC---TCCACCTCCAGTGT 12585287 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || |||| |||| |||||||| ||||| Sbjct 12585286 GATGGTCTTTCCGGTTAAGTTCTTGACAAAGATCTGCAT 12585248 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||||||||| || | | ||||||| || || ||||| ||||| Sbjct 12585019 ACCTCCACGAAGACGCAACACCAAGTGGAGATTAGTCTCCTTCTGGATGTTGTAGTCAGC 12584960 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | |||| || |||||||| || ||||| || | | |||||| || | || Sbjct 12584959 GAGAGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGGGG 12584900 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||||| ||| ||| || ||||| ||| | | | |||||| ||||| Sbjct 12584899 AATGCCTTCCTTATCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTTTCCA 12584841 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 12584840 CCTCGAGGGTGATCGTCTTCCCGGTGAGAGTCTTAACGAAGATCTGCAT 12584792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | |||||||||||| || | || |||||| || || ||||| ||||| Sbjct 12585247 ACCTCCACGCAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 12585188 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | |||| || |||||||| || ||||| || | | ||||||||| | || Sbjct 12585187 CAGAGTTCTACCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 12585128 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATT 42156 | | |||||||| ||| || ||| | ||| | | | |||||| ||| | Sbjct 12585127 GATCCCTTCCTTGTCTTGGATCTTGGCTTTCA-CGTTGTCGATTGTGTCGGAACTC---T 12585072 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | ||||| || || || || | ||||| || ||||| ||||| Sbjct 12585071 CGACCTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 12585020 >seq5 Length=23960834 Score = 107 bits (118), Expect = 2e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||||||||| || | || |||||| || || ||||| || || || || || | Sbjct 16975519 ACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACC 16975460 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| |||||||| ||||| ||||||||||| | || | || ||||| Sbjct 16975459 ATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTT 16975400 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| || |||| | | | |||||| |||| || || || | || Sbjct 16975399 GTCTTGGATCTTGGCCTTGACGTTATCAATCGTGTCCGAGCTC---TCGACCTCCAGTGT 16975343 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || | ||||| |||||||||||||| Sbjct 16975342 GATGGTCTTACCAGTCAAGGTCTTGACAAAGATTTGCAT 16975304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| ||||| | ||| | || |||||| ||||| ||||| || ||| Sbjct 16975302 CCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCC 16975243 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || | |||||| || || || || | ||||||||||||| || Sbjct 16975242 AATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG 16975183 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||||| || || |||| | | | ||||| |||| ||| Sbjct 16975182 ATTCCCTCCTTGTCCTGTATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTC---TCC 16975126 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| ||||| || || ||||||| ||||| |||||||| ||||| Sbjct 16975125 ACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 16975076 >seq4 Length=18984343 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || |||| | |||| || |||||||| || ||||| Sbjct 357501 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTCCCGTCCTCGAGCTGCTTCCCGGCGAA 357560 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||| ||| || |||| ||| Sbjct 357561 GATCAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 357619 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| ||||| ||||| |||||||| || || | Sbjct 357620 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCA 357679 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 357680 CGAAGATCTGCATCTT 357695 >seq3 Length=31725688 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 11141059 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAA 11141000 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | || ||||||||| ||| || |||| | Sbjct 11140999 GATCAGTCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 11140940 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| || || || |||| ||||| || || ||||| || || || || Sbjct 11140939 GTCGATGGTGTCGGAGGACTCGACTTCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTCAC 11140880 Query 42197 AAAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 11140879 GAAGATCTGCATCTT 11140865 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | | ||| | ||||| || | ||| |||||| || || ||||| || || Sbjct 13311655 ACCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGC 13311596 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| |||||||| ||||| ||||||||||| | || Sbjct 13311595 CAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 13311536 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATT 42156 | || |||||||| ||| || || | ||| | | | ||||| |||| | Sbjct 13311535 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTC---T 13311480 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || | |||||||| ||||| || | ||||| || || || ||||| Sbjct 13311479 CCACCTCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCAT 13311428 >seq28121 Length=117 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| ||||| ||||||| | || |||||||||||||| ||||| Sbjct 116 CTCCTTCTGGATGTTGTAGTCAGCGAGAGTCCTTCCATCCTCTAGCTGCTTACCGGCGAA 57 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||| | |||||| || | || | || ||||||||| ||| || Sbjct 56 GATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTT 9 >seq26880 Length=258 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||||| |||| | || || | ||||| |||||||| Sbjct 125 CTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTGCCATCTTCCAATTGCTTCCCAGCGAA 66 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || | ||||||||||| || | | |||||||||| |||||| Sbjct 65 GATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGGATTTT 18 >seq23325 Length=170 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||| || || ||||| || || ||||| || | || || Sbjct 38 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGACCATCCTCA 97 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || ||||| ||||||||||| | || | || ||||||||| | Sbjct 98 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGG 157 Query 42120 ATTTT 42124 || || Sbjct 158 ATCTT 162 >seq11563 Length=123 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| || || || | || |||||||||||||| ||||| Sbjct 119 CTCCTTCTGGATATTGTAATCAGCGAGTGTGCGTCCATCCTCTAGCTGCTTACCGGCGAA 60 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || || | ||||||||| | || | | ||||||||| ||| || Sbjct 59 GATAAGCCTCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542939502850160