Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 seq6 98.7 7e-16 seq1 98.7 7e-16 seq7 96.9 2e-15 seq10 82.4 5e-11 seq8 82.4 5e-11 >seq9 Length=37155481 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || | | || || || |||||||| || ||||| || |||||||| || ||| Sbjct 16960245 CCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCT 16960304 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | || || | || ||||| || | ||||||||||| ||||| || Sbjct 16960305 -AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGG 16960363 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| ||||| ||||| |||||| ||| || | || || || ||| | | || || Sbjct 16960364 AATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 16960423 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| |||||||| || || ||||| || || ||||| || |||||| Sbjct 16960424 CTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCATA 16960472 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| ||| | || ||||||| | || Sbjct 24150876 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGC 24150935 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| |||||| ||||| || || ||||||||||| ||| ||| Sbjct 24150936 TTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGAATCTTG 24150995 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || || ||| ||| || |||||||| || || || || || Sbjct 24150996 GCCTTCACATTGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTT 24151055 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| ||||| || ||||| || Sbjct 24151056 AGGGTTTTCACAAAGATCTGCATTTT 24151081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 ||||||| |||| | ||| || |||||||| || || || || || |||||||| || | Sbjct 16984242 TGCCACCACGCAGACGTAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAG 16984301 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | | | || || | || ||||| || | ||||| | ||| ||||| Sbjct 16984302 CCAAGG-TACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGA 16984360 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| ||||||||||| || || || || | || || || ||| | | || Sbjct 16984361 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGGAACTCTCC 16984420 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| |||||||| ||||| || ||||| || ||||| || |||||| Sbjct 16984421 ACCTCTAGAGTAATGGTCTTACCGGTAAGAGTCTTGACAAAGATCTGCATA 16984471 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || || || ||||| || || || ||||| || || || || | | | || Sbjct 16960488 AAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCCAAGG-TACGACCATC 16960546 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || | || ||||| || | ||||||||||| ||||| ||||| ||||| ||||| Sbjct 16960547 CTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTC 16960606 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| || | || || || ||| | | || || |||| |||||||| Sbjct 16960607 TTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGAGTAATGGT 16960666 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || ||||| || |||||| Sbjct 16960667 CTTCCCGGTCAGTGTCTTGACAAAGATCTGCATA 16960700 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || || || || |||||||| ||| |||| |||| Sbjct 16984487 AAGACCAAGTGGAGAGTAGACTCCTTCTGGATATTGTAATCAGCGAGGGTTCTGCCGTCC 16984546 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || ||||| | ||||||||||| |||||| ||||| || |||||||| Sbjct 16984547 TCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCT 16984606 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| || | || || || ||| | || || || | || || || Sbjct 16984607 TGGATCTTAGCTTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTC 16984666 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || ||||| || |||||| Sbjct 16984667 TTTCCGGTGAGAGTCTTAACAAAGATCTGCATA 16984699 >seq6 Length=26286742 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || || || || || ||||| || |||||||| || ||| ||| | || | || Sbjct 15797395 AAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCT-AGAGTCCTTCCATC 15797337 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 || || || ||||| || ||||||| | ||| ||||| ||| ||||| ||||| || Sbjct 15797336 CTCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATC 15797277 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||| || ||| | || ||||| || | || || || || ||||| || Sbjct 15797276 CTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTAATCGT 15797217 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||| ||| || |||||||||||||| Sbjct 15797216 CTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15797184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | |||||| ||||| || || || |||||||| || Sbjct 15797184 TGCCACCACGGAGCCTGAGGACGAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAG 15797125 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || | || ||||| || | || | | ||| ||||| || Sbjct 15797124 CAAGAGTCCTTCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTG 15797065 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || ||| ||| || ||| | || ||||| || | || | Sbjct 15797064 GGATTCCCTCCTTATCCTGAATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCA 15797005 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 15797004 CCTCCAAAGTAATCGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 15796956 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | |||| || || || || ||||| || || || |||||||| || Sbjct 15797640 TGCCACCACGAAGCCTTAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCG 15797581 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | | || || | |||||||||||| | || | |||||| ||||| | Sbjct 15797580 CCAAAGTACGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAG 15797521 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| || || | || ||||| || | | || | Sbjct 15797520 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTCACTTTATCAATAGTGTCCGAACTCTCAA 15797461 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || ||||| || || || || || || ||||| || |||||| Sbjct 15797460 CCTCCAATGTGATGGTCTTGCCGGTAAGGGTCTTCACAAATATCTGCATA 15797411 >seq1 Length=28635137 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTC 15023 || || || ||||| ||||| || || || ||||||||||| || || | || | || Sbjct 22221435 AAGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCAGCCAAG-GTCCTGCCATC 22221493 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| ||||| || |||||| | || | | ||| |||||| ||||| || |||||||| Sbjct 22221494 TTCCAATTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTC 22221553 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| || | || || || ||| | | || || |||| || || || Sbjct 22221554 CTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGT 22221613 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||| ||| || || || |||||||| Sbjct 22221614 CTTTCCTGTCAAAGTCTTGACGAAGATTTGCAT 22221646 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | || | |||||| || || || || || |||||||| ||| Sbjct 22221876 CCACCACGGAGCCTGAGGACGAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 22221935 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| | || || || || ||||| || | || | | ||| ||||| ||| Sbjct 22221936 AGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 22221995 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || || ||| || || | || || |||||| |||| || Sbjct 22221996 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTATCGGAGCTTTCAACC 22222055 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAA 15188 || || || || || || || ||||||||||| ||||| || ||| || |||||| || Sbjct 22222056 TCCAAAGTGATCGTCTTTCCGGTCAGAGTTTTAACAAAGATCTGC--ATCTGAAATTAA 22222112 >seq7 Length=22597724 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||| || ||| | ||| ||||||| Sbjct 8143617 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTCCTCCCGTCTTCC 8143676 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | |||| |||||| ||||| || || ||||||||||| | Sbjct 8143677 AGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGA 8143736 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || || ||| ||| || |||| ||| || || || Sbjct 8143737 ATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGACCTCTAGGGTTATCGTCTTC 8143796 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || || ||||| ||||| || ||||| ||| Sbjct 8143797 CCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 8143829 >seq10 Length=17599535 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || ||||||||||| | | | || | || || | ||| Sbjct 17168795 TGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTACCATCCTCAAGCTGT 17168736 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | | ||||||||| ||||| ||||||||||| ||| || Sbjct 17168735 TTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTA 17168676 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | ||||| || || | || || || ||||| || || || |||||| Sbjct 17168675 GCCTTCACGTTGTCTATCGTGTCTGAGCTCTCAACTTCCAAGGTTATAGTCTTGCCTGTC 17168616 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||| || ||||| |||||||| Sbjct 17168615 AAAGTCTTCACAAATATTTGCAT 17168593 >seq8 Length=21613650 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || || || |||||||| || ||| |||| ||||| Sbjct 12585231 AACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGAGTTCTACCGTCT 12585172 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || ||||| ||| | ||||| | ||| ||||| || || ||||||||||| Sbjct 12585171 TCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCT 12585112 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| ||| || | || || || ||| | | || || || | ||| || || Sbjct 12585111 TGGATCTTGGCTTTCACGTTGTCGATTGTGTCGGAACTCTCGACCTCAAGGGTGATCGTC 12585052 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||| || || || || || |||||| Sbjct 12585051 TTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 12585019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357216686826965