Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 116 5e-21 seq6 113 6e-20 >seq2 Length=27864329 Score = 116 bits (128), Expect = 5e-21 Identities = 190/271 (70%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 22153570 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22153511 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 22153510 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22153451 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | | ||| || || | | || | ||| | |||||||| || Sbjct 22153450 CGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAGGC 22153394 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 22153393 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 22153334 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || |||||||| |||||| Sbjct 22153333 CTCCTTGTTG--TCCTTGATGTAGGTATCTA 22153305 >seq6 Length=26286742 Score = 113 bits (124), Expect = 6e-20 Identities = 186/265 (70%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| | || || |||||| | ||| |||||||| || Sbjct 22599644 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 22599585 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| || | || || || |||||||||||||| ||||| || Sbjct 22599584 TCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22599525 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | | | |||||| || | | || | || | ||||||||| || Sbjct 22599524 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 22599468 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTT 127767 ||| || ||||| ||| ||| || |||| ||| | ||||| |||| | ||| | Sbjct 22599467 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCT 22599408 Query 127768 CTTTTCTGATGGATCTTTGATGTAC 127792 || || || || || ||||||||| Sbjct 22599407 CTCTT-TGTTG--TCCTTGATGTAC 22599386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613198536858840