Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 185 1e-41 seq6 178 2e-39 >seq2 Length=27864329 Score = 185 bits (204), Expect = 1e-41 Identities = 553/842 (66%), Gaps = 26/842 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || || || |||| | || || | ||||| | | || || | Sbjct 22153856 TCTTCTCGAAGAAATTCGTTTTACCCTGAAGCGAGATCAACTCCATCCAATCAAACGGAT 22153797 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| | ||| || |||||||| | Sbjct 22153796 TCGCCACACCGTACACCTTCCCGTACCCAAGCGCACCCAAAAGCCTATCCGCCACAAACT 22153737 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | || || || |||| || | ||| ||||||| || | ||| ||||| || Sbjct 22153736 CAATATACTGACTCATCAAGTCCCGGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGC 22153677 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||| |||| ||||| ||||| ||| ||| ||| | || || || | | Sbjct 22153676 ACACAAACTCCCTCTCGATCTCCACCGCGTCGCACACGATCGACTTCACGCGCTCCTCCG 22153617 Query 159888 CCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | || || ||| | | | |||||||| ||||||||||| || || Sbjct 22153616 ATAGCTTCGTCCTCAACAAGGT----ATAGATCAGGCACGCGAAGTCGCAGTGAAGGCCT 22153561 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 |||||||| ||||| | ||||||||| | | |||| |||||||||| ||| ||| ||| Sbjct 22153560 TCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCCTCGCTTCTTG 22153501 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 ||||| || |||| ||| |||| ||| || |||||||| |||||| ||| || || Sbjct 22153500 AGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCACGCGAAGGC 22153442 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| |||||| | ||| | | | ||| | ||||| | |||||||| || Sbjct 22153441 CACGATCCTCTCTGCGAAA---GTCTGAGATCCATCGATCCACTTCAAGGCCCATTGGGC 22153385 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| |||| ||| || ||| ||| | ||| || | |||| |||||| Sbjct 22153384 CTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCTCTCCTTGTT 22153325 Query 160186 ATCCTTGAT-CAG---AGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 |||||||| || |||||| ||| |||||| || | ||| | ||| || | Sbjct 22153324 GTCCTTGATGTAGGTATCTAGCAAGAGGCT----GTACATCTCCGAGTGGATATTCTCAA 22153269 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTCCTGTGTGAAC 160300 | || ||||| || |||||| |||||| ||| |||||| || ||||| Sbjct 22153268 TCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGA-CCTGCACGTCGGACATGAAC 22153210 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 | | ||||| | || | ||||||| ||| || ||||| || | ||||| Sbjct 22153209 CGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGT 22153150 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGG 160417 |||||| || | |||| | | |||||| | | ||||||| | || ||||||| Sbjct 22153149 TTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAGTCGCGGGT---GTCTTGG 22153093 Query 160418 GCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAG 160477 | | || || || || ||| |||| || || | || | |||||||| ||||| Sbjct 22153092 GAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCTCCCAG 22153033 Query 160478 AT 160479 || Sbjct 22153032 AT 22153031 >seq6 Length=26286742 Score = 178 bits (196), Expect = 2e-39 Identities = 550/839 (66%), Gaps = 23/839 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || ||||| || || |||| | || || | ||||| | | || || | Sbjct 22599930 TCTTCTCAAAGAAGTTCGTTTTCCCCTGAAGCGAAATCAACTCCATCCAATCAAACGGAT 22599871 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | || || || ||| | ||| || |||||||| | Sbjct 22599870 TCGCCACACCGTACACCTTCCCCTACCCAAGCGCGCCCAAAAGCCTATCCGCCACAAACT 22599811 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | || || || |||| |||| ||| ||||||| || | | |||| ||||| || Sbjct 22599810 CAATATACTGACTCATCAAATCACGGTTCATCCCCACCAACGCGCACGGA-AGCGCGTCG 22599752 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| ||||||| |||| ||||| ||||| ||| |||||| | || || || | | Sbjct 22599751 CACACAAACTCCCTCTCGATCTCCACCGCGTCGCAGACAATCGACTTCACGCGCTCCTCC 22599692 Query 159887 CCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 |||| | || ||| || | | | ||||| || ||||||||||| || || Sbjct 22599691 GTGAGCTTCGTCCTCAATAGAGT----ATAGATCAGGCAGGCGAAGTCGCAGTGAAGGCC 22599636 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| |||||||| ||||||||||| | | | | |||||||||| ||| ||| || Sbjct 22599635 TTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCCTCGCTTCTT 22599576 Query 160006 GAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACG 160064 ||||| || |||| ||| |||| ||| || |||||||| |||||| ||||||| Sbjct 22599575 CAGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCAAGCAAACG 22599517 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 |||||| |||||| | ||| | | | | | | ||||| | ||||||||| | Sbjct 22599516 CCACGATCCTCTCGGCGAAA---GTCTGAGATCCGTCGATCCACTTCATGGCCCATTGGG 22599460 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| |||| ||| || ||| || | ||| || | |||| ||| || Sbjct 22599459 CCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCTCTCTTTGT 22599400 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGG 160244 |||||||| || | | ||| |||||| |||| ||| | ||| || || | Sbjct 22599399 TGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTCTGAGTGGATATTCTCAATCG 22599340 Query 160245 CCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTT 160303 | ||||| || |||||| ||||| | || || ||||| || |||||| Sbjct 22599339 CGATCTGGAACCCGTAGAAGGCACGCGCCT-CGGAGACTTGCACGTCGGACATGAACCGG 22599281 Query 160304 TGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAG 160363 | ||||| | ||| | ||||||| ||| || ||||| || | ||||| | Sbjct 22599280 GAGGCGAGATTCTCTAAAACGATTCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTG 22599221 Query 160364 ATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT---GTGTCACGTCTTGGGCC 160420 ||||| || | ||| | | |||||| || ||||||| | || |||||| | Sbjct 22599220 ATGAAGTGGCGCTCTCCGTCGTTGAG---ATTCTCCCAGTCGCGAGT---GTCTTGCGAG 22599167 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||| || ||||| ||| |||| | |||| || | |||||||| ||||||| Sbjct 22599166 AGATCGACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 22599108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794755147479440