Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 4e-13 seq10 86.0 4e-12 seq3 86.0 4e-12 >seq9 Length=37155481 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| || || || || ||||| || ||| Sbjct 16960473 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCC 16960532 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| || | || || ||| |||| || ||||||||||| |||| || Sbjct 16960533 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 16960592 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| ||| | ||| | | | ||||| | || ||||| Sbjct 16960593 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCAC 16960651 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || || || | || || || ||||||||||| Sbjct 16960652 CTCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 16960699 >seq10 Length=17599535 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAA 39586 || || || ||||||||||| || || || || |||| || | |||||||| | | Sbjct 17168555 TCCTTCTGAATATTATAATCCGC--AAGCGTACGACCATCCTCAAGCTGTTTCCCAGCGA 17168498 Query 39587 AAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCG 39646 | || | | |||||| || | || | |||||| ||||| || ||| ||| | || Sbjct 17168497 AGATGAGTCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCCTGAATCTTTGCTTTGA-CG 17168439 Query 39647 TCGCTACT-GTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 | | | | ||||| | ||| || || ||||| |||||||||||||| || || || || Sbjct 17168438 TTGTCAATCGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTG 17168379 Query 39706 ACGAAGATCTGCAT 39719 || ||||||||||| Sbjct 17168378 ACAAAGATCTGCAT 17168365 >seq3 Length=31725688 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | ||| ||||| || || || ||||| || Sbjct 13311199 GCCTCCACGTAGACGCAAGACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCCGC 13311140 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| ||||| || || ||| |||| || || | |||||| |||| || Sbjct 13311139 CAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 13311080 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || || || || || |||| | ||| || ||||| | ||| || Sbjct 13311079 GATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATA--GTGTCAGAGCTCTCA 13311022 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || || || || || || || || ||||||||||| Sbjct 13311021 ACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 13310972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347199203161817