Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 4e-15 seq6 98.7 4e-15 seq1 96.9 1e-14 seq9 95.1 5e-14 seq8 95.1 5e-14 seq3 93.3 2e-13 seq7 89.7 2e-12 seq2 89.7 2e-12 >seq10 Length=17599535 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| |||||||| ||||| | || ||||| ||| Sbjct 17168365 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAAACAATTACCTTGGAGGTTGAGAGCTCT 17168424 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | ||| ||| ||||| || |||||||| || || || || || Sbjct 17168425 GACACGATTGACAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATCCCACCAGACCAG 17168484 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | |||||||| ||||| ||||| | || | |||||||||||| Sbjct 17168485 CAGAGACTCATCTTCGCTGGGAAACAGCTTGAGGATGGTCGTACGCTTGCGGATTATAAT 17168544 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | ||||| | || |||||| | || || Sbjct 17168545 ATTCAGAAGGAGTCTACCCTTCACCTTGTGTT 17168576 Score = 95.1 bits (104), Expect = 5e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || ||||||| || ||||| || |||||| | || || || ||| Sbjct 9394492 GTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGGCTACT 9394551 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||||||| || | |||||||| ||||||||||| ||||| || Sbjct 9394552 AAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTACTGCT 9394611 Query 451433 GCTGCTCTAGCATATGG 451449 ||| | | || ||||| Sbjct 9394612 GCTTCGTTGGCTTATGG 9394628 >seq6 Length=26286742 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || || || || ||||| || ||| ||| Sbjct 15796272 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 15796331 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || ||||| || ||||| || |||||||| |||||||||||||| Sbjct 15796332 GACACCATCGACAACGTTAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAG 15796391 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || | ||||| || || || ||||| ||||| ||| Sbjct 15796392 CAGAGGCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTACAAT 15796451 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| | || |||||| | || || Sbjct 15796452 ATCCAGAAGGAGTCTACGCTTCACCTGGTCTT 15796483 Score = 96.9 bits (106), Expect = 1e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| ||| |||| || || || || || ||||| || || || Sbjct 15796728 ATGCAGATTTTCGTTAAGACATTGACCGGCAAGACGATCACGCTTGAGGTGGAGAGCTCC 15796787 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || || || ||||| |||||||| || ||||| || || Sbjct 15796788 GACACTATTGACAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAG 15796847 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || ||||| ||||| ||||| | ||||||||||| || || Sbjct 15796848 CAGCGTCTCATCTTCGCTGGCAAACAGCTTGAGGATGGTCGTACTTTGGCGGACTACAAC 15796907 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 15796908 ATCCAGAAGGAGTCTACTCTTCA 15796930 Score = 93.3 bits (102), Expect = 2e-13 Identities = 236/357 (66%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| | || ||||| ||||| || || | |||||||| ||||| | | || Sbjct 6212050 ATGAGGTGGTTCTTGTTGGAGGATCCACGAGGATTCCTAAGATTCAGCAGCTTCTGCAGG 6211991 Query 451956 CTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATG 452015 | |||| || || | || ||||| ||| | |||||||||||||||||||| |||| Sbjct 6211990 ACTTTTTTAATGGGAAGGAGCTTTGTAAAAGCATTAATCCTGATGAAGCTGTTGCCTATG 6211931 Query 452016 GTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTC 452075 | ||||| ||||| || || ||||| || ||| || || || | |||| ||| Sbjct 6211930 GAGCTGCGGTTCAGGCGGCGATTCTGACTGGTGAAGGAAGCGACAAGGTGCAAGATCTTC 6211871 Query 452076 TGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135 || | | || || | || || || ||| | || || ||||||||| |||||||| Sbjct 6211870 TGCTTCTTGACGTGGCGCCGCTGAGCCTCGGAATCGAGACGGCTGGTGGAGTGATGACTG 6211811 Query 452136 ATTTAATTAAACGAGGA--ACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193 || || |||||| || | |||||||||| ||| ||| || ||| Sbjct 6211810 TGTTGAT--CCCGAGGAACACGACGGTTCCTTGTAAGAAGGAGCAAGTGTTCTCTACCTA 6211753 Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGAC 452250 || || || || ||||| || ||||| | ||||||||| ||||| | ||| Sbjct 6211752 TGCGGACAATCAGCCTGGTGTTCTGATCCAAGTCTATGAAGGAGAGCGTGCGAGGAC 6211696 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| |||||||| || ||||| || || || ||| | || ||| | || ||| Sbjct 15797496 AAGATCCAAGACAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTCATCTTCGCTGGCAAA 15797555 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 || ||||| ||||| | ||||||||||| || || || | ||||| | || || ||| Sbjct 15797556 CAGCTTGAGGATGGTCGTACTTTGGCGGACTACAACATCCAGAAGGAGTCTACTCTCCAC 15797615 Query 391254 TTAGTATTAAGACT 391267 || || |||| || Sbjct 15797616 TTGGTGCTAAGGCT 15797629 >seq1 Length=28635137 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| ||| | || || || ||||| || ||||| || ||||| | || || || || Sbjct 7749104 AGTGACTAAGGCTGTTATCACTGTGCCTGCTTACTTTAATGACTCGCAGAGGACGGCTAC 7749163 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||||||| || | ||||||||| | |||||||||| |||||||||||||| || || Sbjct 7749164 TAAAGATGCTGGTCGTATTGCTGGGCTTGATGTTCTTCGTATTATTAATGAACCCACTGC 7749223 Query 451432 AGCTGCTCTAGCATATGG 451449 ||| || | || ||||| Sbjct 7749224 TGCTTCTTTGGCTTATGG 7749241 >seq9 Length=37155481 Score = 95.1 bits (104), Expect = 5e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| |||||||| || || || || ||| | || || || ||| Sbjct 16961155 ATGCAGATCTTCGTTAAGACACTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCT 16961096 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || ||||| || ||||| ||||| ||||| ||||||| ||||| Sbjct 16961095 GATACCATCGACAACGTTAAAGCCAAGATTCAGGATAAAGAAGGTATTCCTCAGGATCAG 16961036 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | || || || | || || || ||||||||||| | || | || || || || Sbjct 16961035 CAAAGATTGATCTTTGCCGGTAAGCAGCTTGAAGATGGGCGTACCCTCGCTGACTACAAC 16960976 Query 391230 ATTGATAAGGATGCAAC 391246 ||| | ||||| |||| Sbjct 16960975 ATTCAAAAGGAGTCAAC 16960959 Score = 95.1 bits (104), Expect = 5e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || ||||||| || ||||| || |||||| | || || || ||| Sbjct 29964859 GTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGGCTACT 29964800 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||||||| || | |||||||| ||||||||||| ||||| || Sbjct 29964799 AAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTACTGCT 29964740 Query 451433 GCTGCTCTAGCATATGG 451449 ||| | | || ||||| Sbjct 29964739 GCTTCGTTGGCTTATGG 29964723 >seq8 Length=21613650 Score = 95.1 bits (104), Expect = 5e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || ||||||| || ||||| || |||||| | || || || ||| Sbjct 14852070 GTTACCAAGGCTGTTGTTACTGTGCCTGCTTACTTTAATGATTCGCAGAGGACGGCTACT 14852011 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||||||| || | |||||||| ||||||||||| ||||| || Sbjct 14852010 AAAGATGCTGGTCGTATTGCTGGGTTGGAGGTTCTTCGTATTATTAATGAGCCTACTGCT 14851951 Query 451433 GCTGCTCTAGCATATGG 451449 ||| | | || ||||| Sbjct 14851950 GCTTCGTTGGCTTATGG 14851934 >seq3 Length=31725688 Score = 93.3 bits (102), Expect = 2e-13 Identities = 131/184 (71%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 ||||||| || ||||| |||||||| | || || ||| ||||||||||| || | | Sbjct 25597005 TTACTGTACCTGCTTACTTCAATGACTCGCAGAGGACAGCTACTAAAGATGCTGGTCGGA 25597064 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 ||||||| || | |||||||| ||||| ||||| || || || ||| || | || |||| Sbjct 25597065 TTGCTGGGTTGGAAGTTCTTCGTATTATCAATGAGCCCACGGCTGCTTCTTTGGCTTATG 25597124 Query 451449 GACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAG 451508 | | | | ||||| || | | | | |||| |||| |||||| ||||||| | Sbjct 25597125 GGTTTG--------AGAGAAAGAGCA-ATGAGACTATTCTAGTCTTTGATCTTGGTGGTG 25597175 Query 451509 GAAC 451512 | || Sbjct 25597176 GTAC 25597179 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || || ||||| ||| | || ||||| ||| Sbjct 13310972 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACTATCACTTTGGAGGTTGAGAGCTCT 13311031 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | |||| || || || |||||||| ||||| || || || || Sbjct 13311032 GACACTATTGACAATGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCGGACCAG 13311091 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || | |||||||| | || ||||||||||| || Sbjct 13311092 CAGAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGATTACAAC 13311151 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 ||| | || || |||| |||||||| || || Sbjct 13311152 ATTCAGAAAGAGTCAACTCTTCACTTGGTCTT 13311183 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||| ||||| || |||||||| || ||||||| ||||| ||||| || || Sbjct 1662674 ACTGTTCCTGCTTACTTTAATGATGCTCAGAGGCAAGCTACTAAGGATGCTGGTAGGATC 1662733 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||||| |||| | ||||||||||| || || || |||||||| | ||||| Sbjct 1662734 GCTGGTTTGGATGTGGAGAGGATTATTAATGAGCCGACGGCTGCTGCTCTTTCTTATGG 1662792 Score = 84.2 bits (92), Expect = 9e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| || |||| || ||||| ||||||||| | ||||| |||| Sbjct 7249944 ATAGGGATAGATCTTGGTACTACCTACTCTTGTGTTGGTGTTTACAAGAATGGCCATGTT 7249885 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGA 451035 || || || || |||||||||||| || | ||| ||||| ||||| |||| || || Sbjct 7249884 GAGATCATTGCTAATGACCAAGGAAACCGTATTACACCTTCGTGGGTTGGTTTCACTGA 7249826 Score = 84.2 bits (92), Expect = 9e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || |||| || || || || || ||||| || || || Sbjct 13311428 ATGCAGATTTTCGTTAAGACCTTGACCGGCAAGACCATCACACTTGAGGTGGAGAGCTCC 13311487 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || ||||| |||||||| || ||||| || || Sbjct 13311488 GACACCATTGACAACGTGAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 13311547 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || ||||| | || ||||| || || || Sbjct 13311548 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCTTGGCAGACTACAAC 13311607 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 13311608 ATCCAGAAGGAGTCCACTCTTCACTTGGT 13311636 >seq7 Length=22597724 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || || || ||||||||| | || || |||| Sbjct 3983762 ATAGGGATAGATCTTGGTACCACCTACTCTTGCGTTGGTGTTTACAAGAACGGTCATGTT 3983703 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||||||||| || | ||||||||| ||||| ||| || || Sbjct 3983702 GAAATCATTGCCAATGACCAAGGCAACCGTATTACTCCTTCCTGGGTTGCTTTCACCGAC 3983643 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || || || || | || | |||||||| Sbjct 3983642 TCCGAGAGGCTCATTGGAGAGGCTGCTAA 3983614 >seq2 Length=27864329 Score = 89.7 bits (98), Expect = 2e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| ||||||| || ||||| |||| |||| | ||||| |||| Sbjct 856307 ATAGGGATAGATCTTGGTACCACCTACTCTTGTGTTGGTGCTTACAAGAATGGTCATGTT 856248 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 ||||| || || ||||||||||| || | || ||||||||||| ||| || || Sbjct 856247 GAAATCATTGCCAATGACCAAGGCAACCGTATCACACCTTCATGGGTTGATTTCACAGAC 856188 Query 451037 TCAGAAAGACTTTTAGGGCAAGCTGCTAA 451065 || | ||| || | || | |||||||| Sbjct 856187 TCCGCAAGGCTCATTGGTGAGGCTGCTAA 856159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974699541160892