Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 122 1e-22 seq10 120 4e-22 seq2 120 4e-22 seq7 114 2e-20 seq6 111 2e-19 seq3 105 8e-18 seq5 104 3e-17 >seq8 Length=21613650 Score = 122 bits (134), Expect = 1e-22 Identities = 304/454 (67%), Gaps = 22/454 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| || ||| || |||| ||||| ||||||||||| ||||| ||||| Sbjct 20963918 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGA 20963862 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGC 16055 || | || || || | |||||||||| || ||||| | | ||| | ||| Sbjct 20963861 TTCAATGTCTGCTCTCTTTCATCATTCCCT------CCACCAATCCCTGTCCCTCTCTGC 20963808 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGAC 16114 | || || ||||||||||| || | ||||| || || || ||| || || | | Sbjct 20963807 CTACCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTC 20963748 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 || ||| ||||| || || | | ||| || ||||||||||||||||| ||||| | | Sbjct 20963747 TTGAAA-AGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGA 20963689 Query 16175 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | | | || | || ||| || ||| | ||||| ||||||||| ||| | || | Sbjct 20963688 CCCCG-AGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCG 20963630 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTC 16293 | ||||| || || || ||| |||| || ||||| || ||| || || Sbjct 20963629 TTTTACCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACCGACCG 20963570 Query 16294 CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 || | | |||||||| | ||| ||||| ||||| Sbjct 20963569 CAGTGAACCTCTCAGGCTTCTTGAGAAACTCCAC 20963536 >seq10 Length=17599535 Score = 120 bits (132), Expect = 4e-22 Identities = 297/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | | | ||| ||||| |||||| | | || ||||| Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | || | || ||| |||| | || |||||||||||||||| ||||||||||| | Sbjct 1381246 GCAACAACGATAACACCAGTGTTACCTT--CAAAACCATCCATCTCCGTCAAAAGCTGAT 1381189 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 ||| || ||||| | ||||||||| || | ||||| | | |||| | |||| Sbjct 1381188 TAAGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCCA 1381129 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | ||||| |||||||| | ||||| || || || || || || || || | Sbjct 1381128 CAGCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAA 1381069 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 |||| || || | | || || ||||| ||||||||||| ||||| | | | | | Sbjct 1381068 GATCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AG 1381010 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || | | ||| || || || |||||| |||||||| || | || || || || Sbjct 1381009 ATGGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCA 1380950 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 16301 ||||| || ||| ||||||| ||||| || ||| || || || | | Sbjct 1380949 GTACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAAC 1380890 Query 16302 CTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||||||| | ||| ||||| ||||| Sbjct 1380889 CTCTCAGGCTTCTTCAGAAACTCCAC 1380864 >seq2 Length=27864329 Score = 120 bits (132), Expect = 4e-22 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| |||||||| | ||| | || | | || || ||| | Sbjct 22153379 AAGAAGGCCCAATGGGCCTTGAAGTGGATCGATGGA---TCTCAGACTTTCGCAGAGAGG 22153435 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || || ||||| || || || ||||||||||| || ||||||| | || | Sbjct 22153436 ATCGTGGCCTTCGCGTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTC 22153495 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||||||||||||||| |||||||| || ||| ||||||||||||||| ||||| || Sbjct 22153496 TGGCTCAAGAAGCGAGGGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTGATCTCGCGG 22153555 Query 102306 GACGAGGGACTCCAC 102320 ||||| || || ||| Sbjct 22153556 GACGAAGGCCTTCAC 22153570 >seq7 Length=22597724 Score = 114 bits (126), Expect = 2e-20 Identities = 219/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| | ||| ||||| || || |||| ||||||||| || Sbjct 17639109 AAACCCATCCATCTCAGTCAGCAACTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 17639166 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| ||||| | | ||| | ||||| |||||||||||||| || || || || Sbjct 17639167 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATA 17639226 Query 16092 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || || || || |||| ||| | ||||| || | ||| ||||||| Sbjct 17639227 CAAGGCGCCTTA--GCCTTCGCCTTCTCAAACAAATCCCTAACCCTAGAGGCACCCACAC 17639284 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 |||| || | ||| ||||| | | || | || || ||| || || || || | Sbjct 17639285 CAACGAAAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCAGCCTCTC 17639344 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | || | |||| || | |||||||||||| || || || |||| ||||||| || Sbjct 17639345 CAGCCACAGCTCTAGCTAAAAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACAAC 17639404 Query 16270 CTCGTGGAATCTTGGCGCC 16288 || |||||||||||||| Sbjct 17639405 CTTTGGGAATCTTGGCGCC 17639423 >seq6 Length=26286742 Score = 111 bits (122), Expect = 2e-19 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 102126 AAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGA 102185 ||||| || | ||||| ||||||||| | || | || | | || || ||| | Sbjct 22599453 AAGAAGGCCCAATGGGCCATGAAGTGGATCGACGGA---TCTCAGACTTTCGCCGAGAGG 22599509 Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 || | || ||||| || || || || ||||||||||| || ||||||| | || | Sbjct 22599510 ATCGTGGCGTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGAAGCTTCTGCTCCATCTTC 22599569 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||||| ||||||||||| |||||||| ||| | ||||||||||||| | |||||||| Sbjct 22599570 TGGCTGAAGAAGCGAGGGCTCATGCCGGGTTTAACCTTCTCCAACGAGTTGATCTCTCGA 22599629 Query 102306 GACGAGGGACTCCAC 102320 ||||| || || ||| Sbjct 22599630 GACGAAGGCCTTCAC 22599644 >seq3 Length=31725688 Score = 105 bits (116), Expect = 8e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 102125 AAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCG 102184 ||||||||| | ||||| ||||||||| | || | || | |||| || ||| | Sbjct 18728106 AAAGAAAGCTCAGTGGGCGATGAAGTGGATCGACGGA---TCTCAGACCTTCGCGGAGAG 18728162 Query 102185 ACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTA 102244 | |||| || || || | | || ||||||||||| ||| ||||||| | || | Sbjct 18728163 GAGCATCGCCTTCGCCTGCGCATAAGGGATCTTCTTCTCCGGTAGCTTCTGCTCGATCTT 18728222 Query 102245 TTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCG 102304 ||||||||||| ||||| || ||||| ||| | ||||||||||||| | |||||||| Sbjct 18728223 CTGGCTCAAGAAACGAGGGCTTATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTCTCG 18728282 Query 102305 TGACGAGGG 102313 ||||| || Sbjct 18728283 AGACGATGG 18728291 >seq5 Length=23960834 Score = 104 bits (114), Expect = 3e-17 Identities = 233/342 (68%), Gaps = 20/342 (6%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | ||| || || || | || | ||||| |||| | || ||| Sbjct 7217382 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACAACGATGATACCAGTGTTACCTT--CAA 7217439 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || || |||||||| | ||| ||||| | |||||||| || Sbjct 7217440 ACCCATCCATCTCAGTTAACAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTACCT---- 7217495 Query 16036 TACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||| | | ||| | ||| | || || |||||||||||||||| ||||||| Sbjct 7217496 --CCACCGATCCCTGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAACAAAGACGA 7217553 Query 16090 TGCATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 |||| || || || || | ||| ||| ||||| || || | || || ||| Sbjct 7217554 TGCAAGGAGCGTTCTCCTTAGCCTTCTTGAAA-AGATCACGGACCCTGGAAGCACCAACA 7217612 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || ||||||||||| ||||| | | ||| | || | || ||| || || || ||| Sbjct 7217613 CCGACAAACATCTCAACAAACTCGGACCCGG-AGATAGAGAAGAACGGCACGCCAGCTTC 7217671 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 ||| || || ||| || ||||| ||||| || ||||| || Sbjct 7217672 ACCAGCTATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCAGG 7217713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620430096739280