Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 116 4e-21 seq10 105 8e-18 >seq8 Length=21613650 Score = 116 bits (128), Expect = 4e-21 Identities = 327/495 (66%), Gaps = 14/495 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | || ||||||||||| | | || ||||| Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | ||||| || Sbjct 20963918 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTC 20963859 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCA---CCTGCCGAACGCTTCTTAC 11677 | ||||| || | ||||| || | | |||| |||| | | || | ||| Sbjct 20963858 AATGTCTGCTCTCTTTCATCATTC-----CCTCCACCAATCCCTGTCCCTCTCTGCCTAC 20963804 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| |||||||| || | || || |||||||| || | |||| | || Sbjct 20963803 CAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTGA 20963744 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 |||| ||||| || | | || |||||||| || ||||||||||| || | | | | Sbjct 20963743 AAAGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGACCCCG 20963684 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | | || | ||| || ||| | ||||||||| |||||| || | ||| || ||| Sbjct 20963683 AG-ATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCGTTTTA 20963625 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || ||||| | |||| ||||||| | || ||||||| ||||| || | Sbjct 20963624 CCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACCGACCGCAGTG 20963565 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGGAGTC 11975 | | ||||||||||||||| || ||||| | ||| | ||| || | |||||| || Sbjct 20963564 AACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAG-TCTTGCTTGGCTTCATC 20963506 Query 11976 GATACCCTCAACATC 11990 || || ||||||| Sbjct 20963505 GACTCCAGCAACATC 20963491 >seq10 Length=17599535 Score = 105 bits (116), Expect = 8e-18 Identities = 294/446 (66%), Gaps = 24/446 (5%) Strand=Plus/Minus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 1381273 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACAACGATAACACCAGTGTTACCTTCAAAA 1381214 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC--- 11652 || ||||| || || | |||||| || | ||||||||| | ||||| || | | Sbjct 1381213 CCATCCATCTCCGTCAAAAGCTGATTAAGCGTCTGTTCTCTTTCATCATT--ACCTCCAC 1381156 Query 11653 --ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 |||||| | | | | | |||| ||||| || |||||||| | || || |||| Sbjct 1381155 CAATACCAGTTCCT---CTTTGCCTACCCACAGCATCTATCTCATCCACAAAGACAATAC 1381099 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||| | |||| || |||||| ||||| || | | || |||||||| | Sbjct 1381098 AAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGA 1381039 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACAC----TG--AATGAAGGGAACATTAGACT 11824 | ||||||||||| || | |||||| | || || ||| || || || | Sbjct 1381038 CAAACATCTCAACAAACT------CAGAACCCGAGATGGAAAAGAACGGTACGCCAGCTT 1380985 Query 11825 CACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGG 11884 ||||||| ||||| || | ||| || || || ||||| || | |||| |||| || Sbjct 1380984 CACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGTACCGGGAGGACCAACGAGGAGAA 1380925 Query 11885 CGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCA 11944 | || |||||| ||||| || | | | |||||||||||| || || |||| Sbjct 1380924 CACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 1380865 Query 11945 CAATCTCC-TCAAGTTCCTCCTTGGC 11969 | | ||| | ||| || | |||||| Sbjct 1380864 CCACTTCCATGAAG-TCTTGCTTGGC 1380840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588679678812200