Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10 131 2e-25 seq8 131 2e-25 seq7 127 2e-24 seq6 113 5e-20 seq5 102 1e-16 seq2 91.5 2e-13 >seq10 Length=17599535 Score = 131 bits (144), Expect = 2e-25 Identities = 297/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 1381306 CGGTCAAAACGGCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 1381247 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||||||| || ||| Sbjct 1381246 GCAACAACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAAAAGCTGATTA 1381187 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || ||||| | ||||||||| || | ||||| | | |||| | ||||| Sbjct 1381186 AGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCCACA 1381127 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| |||||||| | ||||||||||| || || || ||| ||| || ||| Sbjct 1381126 GCATCTATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGA 1381067 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || ||||| || || ||||| ||||||||||| ||||| | | | | | || Sbjct 1381066 TCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AGAT 1381008 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | | ||| || || || |||||| |||||||| || | || || || || || Sbjct 1381007 GGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGT 1380948 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9610 ||| || ||| ||||||| |||| || ||| || || || | | || Sbjct 1380947 ACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCT 1380888 Query 9611 CTCAGGTTGCTTGAGAAAATCCAC 9634 |||||| | ||| ||||| ||||| Sbjct 1380887 CTCAGGCTTCTTCAGAAACTCCAC 1380864 >seq8 Length=21613650 Score = 131 bits (144), Expect = 2e-25 Identities = 301/450 (67%), Gaps = 14/450 (3%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 20963978 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 20963919 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| ||||| || || || Sbjct 20963918 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAGAGCTGATTC 20963859 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTT 9365 | || || || | |||||||||| || ||||| | | ||| | ||| | Sbjct 20963858 AATGTCTGCTCTCTTTCATCATTCCCT------CCACCAATCCCTGTCCCTCTCTGCCTA 20963805 Query 9366 CCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 9425 || || ||||||||||| || | ||||||||||| || ||| || || | | Sbjct 20963804 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTG 20963745 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || ||||| || ||||| ||| || ||||||||||||||||| ||||| | | | Sbjct 20963744 AAAAGATCACGCACCCTCGAGGCCCCAACACCAACAAACATCTCAACAAACTCAGACCCC 20963685 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | | || | || ||| || ||| | ||||| ||||||||| ||| | || || || Sbjct 20963684 G-AGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGCGTTTT 20963626 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAA 9604 ||| || || || ||| |||| || |||| || ||| || || || Sbjct 20963625 ACCAGTCCCAGGAGGACCAACGAGAAGAACACCTTTGGGGATCCGAGCACCGACCGCAGT 20963566 Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | | |||||||| | ||||||||| ||||| Sbjct 20963565 GAACCTCTCAGGCTTCTTGAGAAACTCCAC 20963536 >seq7 Length=22597724 Score = 127 bits (140), Expect = 2e-24 Identities = 253/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| | |||| | |||||| || || | |||| | ||| | | | | ||| Sbjct 17639053 TCAAGCACATCAGGCCTATTCGTAGCAGCCAAAACAATCACACCAGAGTTACCACTAAAC 17639112 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| |||| | || ||||| || || |||| ||||||||| || | | Sbjct 17639113 CCATCCATCTCAGTCAGCAACTGATTAATCGTCTGCTCCCTCTCATCATTCCCT--CCTC 17639170 Query 9345 CCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 ||| ||||| | | ||| | ||||| |||||||||||||| || || |||||||| | Sbjct 17639171 CCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCATCGATAAAAACAATACAAG 17639230 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | || | || | ||||| | ||| | |||||| ||| ||||||||||| | Sbjct 17639231 GCGCCTTAGCCTTCGCCTTCTCAAACAAATCCCTAACCCTAGAGGCACCCACACCAACGA 17639290 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAA 9522 | | ||| ||||| | | || | || || ||| || || || || || || | Sbjct 17639291 AAAGCTCAACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCAGCCTCTCCAGCCA 17639350 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTG 9582 |||| || | |||||||||||| || || || |||| ||||||| ||| | Sbjct 17639351 CAGCTCTAGCTAAAAGAGTCTTACCAGTCCCGGGGGGACCCACGAGGAGACAACCTTTGG 17639410 Query 9583 GAATCTTGGCGCC 9595 ||||||||||||| Sbjct 17639411 GAATCTTGGCGCC 17639423 >seq6 Length=26286742 Score = 113 bits (124), Expect = 5e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || | || || |||||| || || |||||||| || Sbjct 22599644 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 22599585 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 22599584 TCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22599525 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 |||||||| | | | ||||||||| | |||| | ||| | ||| ||||| || Sbjct 22599524 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 22599468 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 22599467 CCATTGGGCCTTCTTC 22599452 >seq5 Length=23960834 Score = 102 bits (112), Expect = 1e-16 Identities = 275/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| ||||| || | || | ||||| || | | ||||| Sbjct 7217382 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 7217441 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || || || ||||| | ||| ||||| | |||||||| || Sbjct 7217442 CCATCCATCTCAGTTAACAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTACCT------ 7217495 Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 ||||| | | ||| | ||| | || || |||||||||||||||| ||||| || Sbjct 7217496 CCACCGATCCCTGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAACAAAGACGATG 7217555 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || || | | || ||||| || ||||| || || ||||| Sbjct 7217556 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGGACCCTGGAAGCACCAACACCG 7217615 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | ||| | || | || ||| || || || |||||| Sbjct 7217616 ACAAACATCTCAACAAACTCGGACCCGG-AGATAGAGAAGAACGGCACGCCAGCTTCACC 7217674 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| || ||||| ||||| || ||||| || ||| ||| || | || Sbjct 7217675 AGCTATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCAGGAGGACCAATGAGCAGAACTCC 7217734 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | || ||| || ||| || | | |||||||| | ||| ||||| || || Sbjct 7217735 CTTCGGGATCCGAGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAAC 7217791 >seq2 Length=27864329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 22153570 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 22153511 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 22153510 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 22153451 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 ||| || || | | | ||| ||||| | |||| | || | ||| |||| || Sbjct 22153450 CGCGAAGGCCACGATCCTCTCTGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAGGC 22153394 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 22153393 CCATTGGGCCTTCTTC 22153378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589683973284760