Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq24705 601 4e-167 seq40249 598 5e-166 seq27683 257 2e-63 seq13684 163 3e-35 seq9 114 2e-20 seq34986 109 7e-19 seq10 104 3e-17 seq1 100 3e-16 seq34187 87.8 2e-12 seq38010 82.4 9e-11 seq34342 82.4 9e-11 >seq24705 Length=1162 Score = 601 bits (666), Expect = 4e-167 Identities = 727/983 (74%), Gaps = 5/983 (1%) Strand=Plus/Plus Query 179738 GTGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTT 179797 ||||| | ||||||| | ||| |||| || | || || || || |||| ||||| Sbjct 181 GTGGGGTCGCTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTT 240 Query 179798 CGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCA 179856 ||| ||| ||||||| || || | ||| | |||||| |||| || || ||||||||| Sbjct 241 CGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCA 299 Query 179857 TCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGT 179916 ||||||| || || || || || ||||| || ||||| || || ||||||| | | | Sbjct 300 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 359 Query 179917 ATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACT 179976 |||| ||||| || ||||||||||| || | ||| |||| || || || | |||| Sbjct 360 ATGGAAACAATATTATCTCTGGTGCTATTATCCCTACTTCTGCGGCGATCGGATTGCACT 419 Query 179977 TCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 180036 | || || || |||||||| ||||| |||| |||||| | || || |||||||||| Sbjct 420 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATG 479 Query 180037 AACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAAC 180096 | || | || | |||| | | |||| | | || ||||||||||||||||||| Sbjct 480 AGCTAATTGTTCTACACTCCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 539 Query 180097 TTTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCT 180155 || || || |||||||||| || ||||| ||| || |||||||| ||||| || || Sbjct 540 TTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCA 598 Query 180156 GCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATG 180215 || || ||||||| ||| | | || ||| | |||||||| || ||||| | ||| Sbjct 599 GCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATG 658 Query 180216 CCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATC 180275 || | || || ||||| || ||||||| ||| |||| ||||| || ||||||||||| Sbjct 659 CCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATT 718 Query 180276 CTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCC 180335 || |||||||| || |||||| | || ||||| ||||| |||||||| || || || Sbjct 719 CTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGT 778 Query 180336 GCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCC 180395 || ||||| ||||| |||| || ||| || | | ||||| ||||||| ||| || Sbjct 779 GCTATGCATGGTTCTTTGGTAACTTCTAGTTTG-TCAGGGAAACTACTGAAAATGAATCT 837 Query 180396 CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACAT 180455 || | |||||||| ||||||||||| ||||| || || || || || ||||| ||| Sbjct 838 GCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCAT 897 Query 180456 GGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCAC 180515 || || || || || | |||||||| ||||| ||||||||||| ||||| | ||| Sbjct 898 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 957 Query 180516 TTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 180575 |||||| |||| || |||||||| || || |||||||||||||| | || | || || Sbjct 958 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACT 1017 Query 180576 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 180635 ||||| |||||||| || |||||||| |||||||| || | ||||| |||||||||| Sbjct 1018 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGC 1077 Query 180636 GTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCAC 180695 || | || |||||||| || | ||||||| ||| || ||||||||||| |||||| Sbjct 1078 GTTATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCAC 1137 Query 180696 GAGCGTAATGCTCACAACTTCCC 180718 || |||||||||||||||||||| Sbjct 1138 GAACGTAATGCTCACAACTTCCC 1160 >seq40249 Length=153482 Score = 598 bits (662), Expect = 5e-166 Identities = 736/1003 (73%), Gaps = 2/1003 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| |||| ||| | ||||| || || | || ||||| Sbjct 1351 TGGGGTCGCTTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTT 1292 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858 || ||| ||||||| || || | ||| | |||||| | || || |||| ||||| Sbjct 1291 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATT 1232 Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 1231 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 1172 Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978 || ||||| || || || ||||| || ||||| |||| || |||||| | || || Sbjct 1171 GGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTT 1112 Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038 || || ||||||||||| ||||| |||| || ||||| || ||||||||||||| || Sbjct 1111 TACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAA 1052 Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098 || | || | ||||| | |||| | | || ||||||||||||||||||||| Sbjct 1051 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 992 Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157 || || |||||||||| || ||||| ||| || |||||||| ||||| || || || Sbjct 991 AGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 933 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 || ||||||| ||| | |||| || | |||||||| || ||||| | ||||| Sbjct 932 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 873 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 || || || ||||| || ||||||| ||| |||| ||||| || ||||||||||| || Sbjct 872 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 813 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| || |||||| | || ||||| ||||| |||||||| || || || || Sbjct 812 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGC 753 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 752 TATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 693 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 || | ||||||| || |||||||||||||| || |||||||| || ||||| || || Sbjct 692 TAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 633 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 || || || || |||||||||| ||||| |||||||| || ||||| | || || Sbjct 632 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 573 Query 180518 CTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 180577 |||| | || || ||||| || || || || ||||| ||||| | || | || || || Sbjct 572 CTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTAT 513 Query 180578 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGT 180637 ||| |||||||| || |||||||| |||||||| || | ||||| ||||||| ||||| Sbjct 512 GGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGT 453 Query 180638 GCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGA 180697 | || |||||||| || | | ||||| ||| || ||||||||||||||||| || Sbjct 452 TATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 393 Query 180698 GCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGAG 180740 |||||||||||||||||||| || ||||| || |||| |||| Sbjct 392 ACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 350 Score = 587 bits (650), Expect = 9e-163 Identities = 740/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | |||||||| || ||||| || |||||||| Sbjct 31935 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 31994 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | ||||| ||| |||| || || || ||| Sbjct 31995 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAGGTACAACCTTT 32054 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| | Sbjct 32055 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32114 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || || || || |||||| | | | | |||||| | | |||| |||||| Sbjct 32115 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32174 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 |||||||| || || ||||| || ||| ||| | || || || ||||||||||| Sbjct 32175 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGGCTTTTGTT 32234 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || |||||||| || ||||| | || ||||||||| | | ||||||||||||||||| Sbjct 32235 GCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 32294 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | ||||| || ||||| || || || || ||||| |||||||| || || Sbjct 32295 TCTGTTCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 32353 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 ||||| ||||| || ||||| || || ||||| |||||||||||||||| ||||| || Sbjct 32354 TTCTGTCTTTCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 32413 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| || || || ||| | ||||| |||| || |||||||||||||| | || Sbjct 32414 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 32473 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| || |||||| | ||||| | || | | | || ||||| Sbjct 32474 CCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGTTATGCGCTATTCA 32533 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| ||| || Sbjct 32534 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 32593 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 32594 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 32653 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| || |||| ||| |||||| | ||||| |||||||||||| | ||||| Sbjct 32654 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 32713 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | | || | | ||||| ||| | ||||| || Sbjct 32714 ACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTAGCTTTGAACCTACG 32773 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 32774 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCGGAATTTGAGACTTT 32833 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 ||| || || || ||||| || || |||||| | || || ||| | || | ||||| Sbjct 32834 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGCGCTTGGATGGCGGCTCAAGATCA 32893 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 32894 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 32947 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 108145 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 108086 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 108085 CCTACTTGGGGAG 108073 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 128619 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 128678 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 128679 CCTACTTGGGGAG 128691 >seq27683 Length=354 Score = 257 bits (284), Expect = 2e-63 Identities = 267/350 (76%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 181823 GGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGG 181882 ||||| |||||||| || || |||||||| || || ||||| ||||| ||||| ||||| Sbjct 352 GGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGG 293 Query 181883 TTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGC 181942 ||||||||||||||||| || || || ||||| || || ||| | || ||| |||| || Sbjct 292 TTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTTTTCTTCCAAGGA 233 Query 181943 TTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGC 182002 ||||||||||||||| | || || || ||||||||||| ||||| || | | |||| Sbjct 232 TTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCG 173 Query 182003 GCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGAC 182062 || | || | || ||||| || | |||||| || || ||||| | | | |||||||| Sbjct 172 GCTCTGCTATGCGCTATTCATGGAGCGACCGTAGAAAACACTCTATTTGAGGACGGTGAT 113 Query 182063 CAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTT 182122 |||||||| ||| || || | ||||||||| |||||||| ||||| ||||| Sbjct 112 GGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTC 53 Query 182123 ACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAA 182172 || || |||||||| ||||| || ||||| ||| |||| ||| |||||| Sbjct 52 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAA 3 >seq13684 Length=3594 Score = 163 bits (180), Expect = 3e-35 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 182177 TGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGT 182236 ||||| |||||||||||||| ||||| || || | ||| | |||| ||| | || || Sbjct 3 TGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGC 62 Query 182237 ATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCA 182296 | |||| | ||||| ||| | ||||| ||||||||||| ||||| |||||| | ||| Sbjct 63 GTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCA 122 Query 182297 TCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTG 182356 | ||||| || || || ||||| |||||||| || || ||||| || || || ||| | Sbjct 123 GCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATT 182 Query 182357 CGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTA 182416 ||||| ||| | ||| | ||||| || ||||| || || | ||||||||||| || Sbjct 183 CGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTT 242 Query 182417 TTACCCAGAGGTAACGCACT 182436 |||| | || ||||| || Sbjct 243 CTACCACGTGGAAACGCTCT 262 >seq9 Length=37155481 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||||||| | || Sbjct 8544648 CTCGACGCTGCGGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 8544589 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | |||| || || ||||| || || |||||| Sbjct 8544588 TCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTGTTGACCAGTCTGACCAGAGTTTCCTC 8544529 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | ||||| || ||||| || |||| ||||||||||| Sbjct 8544528 GATGATGACCAGATTGCTGCAGGGTTTGTTCTCACTTGTGCGGCTTATCCTAC 8544476 >seq34986 Length=93546 Score = 109 bits (120), Expect = 7e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| || | || || || || |||||||| ||| |||| Sbjct 33512 CTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGTTCCTGC 33571 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| ||| | ||| | || || ||||| || || |||||| Sbjct 33572 TCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 33631 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | |||||||||||| || |||| ||||||| ||| Sbjct 33632 GATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATCTTAC 33684 >seq10 Length=17599535 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || ||||| || ||||||| ||| |||| |||| || ||||||||||| || |||||| Sbjct 16803128 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGCAC 16803187 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || || ||||| | || |||| ||||| ||| | ||||| | || | ||| | Sbjct 16803188 CCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGTAT 16803247 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 |||| |||| || ||| | || | ||||||| ||| ||| || ||| | Sbjct 16803248 GGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACGAA 16803307 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACA 180454 |||| | || |||||||||||||| || |||||||| || |||| || Sbjct 16803308 AGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 >seq1 Length=28635137 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || |||||||| || ||||| ||| | || || || || |||||||| ||| | || Sbjct 17178806 CTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGTGCTGGTTCGTGC 17178865 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| || ||| ||| | ||| || || ||||| || || |||||| Sbjct 17178866 TCAAGCTGTGCCGGCAAAGTTGTGTCTGGATTTGTTGACCAGTCTGACCAGAGTTTCCTC 17178925 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | ||||| || ||||| || |||| ||||||||||| Sbjct 17178926 GATGATGACCAGATTGCTGCAGGGTTTGTTCTCACTTGTGCGGCTTATCCTAC 17178978 >seq34187 Length=13517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 181715 GCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAA 181774 |||||||| || |||||||| || ||||| | || ||||||||| | | ||||||||| Sbjct 532 GCTTTTGTTGCTCTCCACGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAA 473 Query 181775 CTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGC 181833 |||||||| ||| || | | ||||| || ||||| || || || || ||||| ||||| Sbjct 472 CTTGCTCGATCTGTTC-AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 414 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 181887 TTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTC 181946 ||||| | ||||| ||||| ||||| || || || ||| | | ||| |||| | |||| Sbjct 417 TTGCGTCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCACTTTTTCCAACGGTTTC 358 Query 181947 ATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGG 181998 |||||||||| | || || || ||||||||||| || |||||| | ||||| Sbjct 357 ATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGG 306 >seq38010 Length=70015 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||||| || |||||||| |||||||| || | ||||| ||||||| ||||| | || Sbjct 45327 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTTTTAAT 45386 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 180692 |||||||| || | | ||||| ||| || ||||||||||||||| Sbjct 45387 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATG 45434 >seq34342 Length=12685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 11524 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 11583 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 11584 CCTACTTGGGGAG 11596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610089701739960