Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq40249 533 2e-146 seq24705 533 2e-146 seq10 158 2e-33 >seq40249 Length=153482 Score = 533 bits (590), Expect = 2e-146 Identities = 716/995 (72%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| |||||| || ||| | ||| |||| ||||||||||| | Sbjct 1342 TTCTGTAACTGGATAACTAGTACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1283 Query 215354 ATGATTCCTTGCCTCCT---CGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCA 215410 ||||| ||| | | | |||| || || || | | |||| ||||||| ||||| Sbjct 1282 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCT 1226 Query 215411 CCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAAC 215470 ||||| || ||||| || || || | || || ||| |||| ||| | | || || ||| Sbjct 1225 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 1166 Query 215471 AACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCT 215530 || || || || ||||| || | |||| ||| || || || || || || ||||| Sbjct 1165 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 1106 Query 215531 ATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTT 215590 ||||||||||| ||| | ||||| |||||||| ||||| ||||| |||| |||| || Sbjct 1105 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1046 Query 215591 ATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | | ||||| | ||||| | || || || | ||||||||||| || | Sbjct 1045 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 986 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | | |||||| | |||||||| |||||| || || || ||||| | ||||| | Sbjct 985 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 926 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || ||| ||||||| |||||| || ||| Sbjct 925 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 866 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||| Sbjct 865 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 806 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 ||||| |||||||||||||| |||||||| ||||| || || | || ||| ||||| Sbjct 805 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCAT 746 Query 215891 GGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTAC 215950 ||||| | || || ||| | | ||||| || || || || | |||||| || | Sbjct 745 GGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 686 Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||| Sbjct 685 GGTTACAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTT 626 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | ||||||||||| || ||||||||| || | | | || |||||| | Sbjct 625 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 566 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | || || | |||| ||| ||||| | ||| | |||||||| ||| Sbjct 565 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTC 506 Query 216131 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCT 216190 ||||| || |||||||| |||||||| || || || || || |||||| | Sbjct 505 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAAT 446 Query 216191 ACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAAC 216250 |||||||| || || ||||| | || |||||||||||||| ||||| || ||||| Sbjct 445 ACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 386 Query 216251 GCTCACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285 |||||||||||||| ||||| | ||||||| ||| Sbjct 385 GCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGA 351 >seq24705 Length=1162 Score = 533 bits (590), Expect = 2e-146 Identities = 689/950 (73%), Gaps = 1/950 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| |||||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 212 ACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 271 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 272 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 331 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | ||||| ||||| || |||||||||||| || | Sbjct 332 CGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATC 391 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || |||||||| ||||| ||||| || |||||||| ||| | ||||| Sbjct 392 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 451 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | ||||||||||| |||| | || || | | |||| | | ||||| | Sbjct 452 GAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTCCTTACTTGGTGTA 511 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | ||||||||||| || | | | |||||| | |||||||| Sbjct 512 GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATT 571 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || || | Sbjct 572 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 631 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || || ||||||| |||||| | ||||||||||| || ||||||| ||| Sbjct 632 GGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 691 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 692 ATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 751 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | || ||| ||||| ||||| | || || ||| | | Sbjct 752 GGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACTTCTAGT-TT 810 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 |||| || || ||||| | |||||| || | |||||||| || || |||||||| Sbjct 811 GTCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAA 870 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || || || ||||| || ||||| ||||| || | ||||||||||| || Sbjct 871 GAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 930 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 |||||||||||| | | | ||||||||| | || || | ||||| | | ||| Sbjct 931 AGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATC 990 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| |||||||| || |||||||| |||||| Sbjct 991 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 1050 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| |||||| ||||||||| || | | ||| | Sbjct 1051 CAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 1110 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCC 216264 || ||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1111 GCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCC 1160 >seq10 Length=17599535 Score = 158 bits (174), Expect = 2e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 215769 GAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGC 215828 |||||||||| || ||||||| ||| |||| |||| |||||||||||||||||| |||| Sbjct 16803126 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCCGGCTGAGCACAACATTCTTATGC 16803185 Query 215829 ACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGC 215888 ||||||| ||||| |||||||| | |||||| ||| ||||||| || || || ||| Sbjct 16803186 ACCCATTTCACATATTAGGTGTAGTTGGTGTATTCAGTGGTTCCTTATTTAGTGTTATGT 16803245 Query 215889 ACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACT 215948 | |||| | || || ||| | |||| || | || || | | |||||| ||| Sbjct 16803246 ATGGTTTTTTGGTAACTTCTAGTTTAATTAGGAAAACCACAAAAAATGAATCTGCTAACG 16803305 Query 215949 ACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACA 216000 | |||| | ||||| ||||| || ||||| |||||||| ||| |||| || Sbjct 16803306 AAAGTTATAGATTCGGTCAAGAAGAAGAAACTTACAACATTGTAACTGCTCA 16803357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744706740133520