Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq40249 645 4e-180 seq24705 585 3e-162 seq10 140 4e-28 >seq40249 Length=153482 Score = 645 bits (714), Expect = 4e-180 Identities = 726/972 (75%), Gaps = 0/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 372 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 431 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 432 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 491 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 492 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 551 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 552 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 611 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || ||||||||||| ||||| || |||||||| ||||||||| Sbjct 612 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGA 671 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 672 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 731 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 732 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 791 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 792 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 851 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| || | || || Sbjct 852 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAG 911 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 912 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 971 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 972 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 1031 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| ||||| || ||||||||||| || | | Sbjct 1032 AAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAGCCATTCATCAACGGAT 1091 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||||||||| ||| | |||| | |||| Sbjct 1092 GCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCA 1151 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 1152 CCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 1211 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGA 84884 ||||| ||||| || ||| ||| |||||| || || ||| | ||| || | | || Sbjct 1212 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG 1271 Query 84885 GTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACC 84944 || || ||||| | | |||||||| |||| || | |||||| | ||| || | | Sbjct 1272 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTACTAGTTATC 1331 Query 84945 CAATCACAGAAG 84956 || | ||||||| Sbjct 1332 CAGTTACAGAAG 1343 >seq24705 Length=1162 Score = 585 bits (648), Expect = 3e-162 Identities = 716/973 (74%), Gaps = 3/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 1160 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGGTTAGCACGGTTGATG 1101 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||| ||||| || | | || ||||| || Sbjct 1100 ATATCAGCCCAAGTATTAATAACGCGACCTTGACTATCAACTACAGATTGGTTGAAATTG 1041 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||| || || || Sbjct 1040 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATTCCTACT 981 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| |||||||| |||||| ||| Sbjct 980 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGG 921 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| ||||||||||||||||| || |||||| Sbjct 920 AAGATTAATCGGCCAAAATAACCATGAGCAGCCACAATATTATAAGTTTCTTCCTCTTGA 861 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || |||||||| | || || ||||||| |||||||| | || | | |||| Sbjct 860 CCAAATTTGTAACCCTCATTAGCAGATTCATTTTCAGTAGTTTCCCTGACAA-ACTAGAA 802 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| ||||| | || |||||||||||||| || || Sbjct 801 GTTACCAAAGAACCATGCATAGCACTAAATAGGGAGCCGCCGAATACACCAGCTACACCT 742 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 741 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 682 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || | ||||| |||||||| || ||||| || | ||| || Sbjct 681 AAAGTACCAGAGATTCCTAAAGGCATACCATCAGAAAAGCTTCCTTGACCAATAGGGTAA 622 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 621 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 562 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 561 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 502 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | | |||| | |||| || | |||||| |||||||| |||| ||| || || | | | Sbjct 501 AAGGAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGAT 442 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || || || ||| | || | | ||| Sbjct 441 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGGATAATAGCA 382 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || |||||||| || | | |||||||| || |||||||| ||||| ||| Sbjct 381 CCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 322 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | || Sbjct 321 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 263 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| || | || | ||| || | |||| || | Sbjct 262 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGATTTTCAGTGCTAGTTAT 203 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 202 CCAGTTGCAGAAG 190 >seq10 Length=17599535 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 84249 TGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGT 84308 ||||||| ||||| || |||||||| |||||||||||||| | |||| | ||| Sbjct 16803357 TGAGCAGTTACAATGTTGTAAGTTTCTTCTTCTTGACCGAATCTATAACTTTCGTTAGCA 16803298 Query 84309 GAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCA 84368 || |||||| ||| |||| | |||| | |||||| || | |||||| ||| || Sbjct 16803297 GATTCATTTTTTGTGGTTTTCCTAATTAAACTAGAAGTTACCAAAAAACCATACATAACA 16803238 Query 84369 GAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGG 84428 |||| | |||| |||||||||| | || || || |||||||| || |||||||| Sbjct 16803237 CTAAATAAGGAACCACTGAATACACCAACTACACCTAATATGTGAAATGGGTGCATAAGA 16803178 Query 84429 ATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGAT 84478 ||||| || || ||| |||| |||| ||| ||||||| || || ||||| Sbjct 16803177 ATGTTGTGCTCAGCCGGGAATACAATCATAAAGTTGAAAGTACCAGAGAT 16803128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570986185110920