Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20rapa_20[refseq_20GCF_5F000309985.1_202012-11-07] 40,249 sequences; 284,129,391 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq8 84.2 2e-11 >seq6 Length=26286742 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||| | ||||||| || | || | | |||||| |||||||| Sbjct 24943935 ACCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 24943994 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| ||||| || || ||| ||||||||| |||| | || || || || Sbjct 24943995 ATTAGATTCCCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 24944054 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| ||||| || || ||| ||| | |||||| ||| | ||||||||||| Sbjct 24944055 AACACCAATACCCCCAGCTGACTTACTTATAACCGCACACTCTTTCAATGTATCATAAAT 24944114 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || || |||||||| |||| Sbjct 24944115 CCCCTCAATGCTATCATCCTTCAT 24944138 >seq8 Length=21613650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| |||||||| ||| || | || | Sbjct 16023626 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 16023685 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| || || || || || || | ||| || | ||| | Sbjct 16023686 GTAAGTTTTGATTGCGGAATCAATGTCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 16023745 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | || || |||||||| | ||| || | ||| || || ||||| | || | Sbjct 16023746 CATGTGCTGCGGCCTTTCAACGACTTTCCCATGGACTTTTAAGAGGTATGACCTCTCAAG 16023805 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| || ||||| |||| ||| ||| || ||||| ||| ||| Sbjct 16023806 AGTTTTGAACCCAAAGTAGTCATATTCAAAATCACGATCATAAATGATT 16023854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561825996036360